Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01335 ATGTTGAATTCGAAATCTTTAAAAATAAGCAGATCGTCTCTGTCATCAACTTCTGATGCATCTGAAGCAAACAAGCCTCCTTTACCTCCGACTGTAACATTTGGCCGAAGAACTCCCTCGGGTCGATACATCAGTTACTCCAGAGATGATCTTGACAGTGAGCTAGGAAGTCACGATTTCATGAATTATACGGTGCATTTACCACCGACTCCTGATAACCAACCTATGGATACGACGATCTCACAGAAAGTTGAGGAGCAGTATGTGTCGAGTTCTCTCTTCACGGGGGGATTCAACAGTATTACTCGAGCTCATCTAATGGATAAAGTGACTGAATCTGAAGTGAACCATCCGCAGATGGCCGGTGCGAAAGGGTCTTCGTGTGGTGTTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGTGGATATTCTTCCTTGTGAGTGTGATTATAAGATATGTAGAGATTGCTATATAGATGCAGTGAAAACAGGAGATGGAATGTGCCCGGGATGCAAAGAACCGTATAAGAACACAGAACTCGATGAGGTGGCTGTGGATGATGGAAGGCCACTTCCACTTCCCCCTCCAGTTGGGGCGTCTAAAATGGAGAGGAGACTGTCCTTAATGAAGTCGTCAAAATCTGCCCTAATGAGGAGTCAAACTGGTGATTTTGATCACAATCGGTGGCTCTTTGAAACAAAGGGTACCTATGGTTATGGCAATGCTATCTGGCCAAAGGAAGGAGATTTTGGAAATGGAAAAGATGATGTTTCTGAGCCAACCGAGTTGATGAGCAGACCATGGAGGCCACTCACGCGGAAATTGAAGATACCCGCTGCTGTTCTCAGCCCATATCGTCTCATCATTTTTATTCGTATGGCGGCTCTTGTACTGTTCCTGCATTGGAGGATCACACACAAAAATACTGATGCTATCTGGTTATGGGGAATGTCTATAGTTTGTGAAATATGGTTTGCTTTCTCTTGGCTTCTTGATCAATTGCCTAAGCTATGCCCAGTAAATCGTTCTACAGATCTTAATGTTCTGAGGGAAAAATTCGAATTACCAACTCCTGAGAATCCTACAGGAAAGTCTGATCTGCCAGGCATAGATGTCTTTGTCTCAACTGCTGATCCTGAGAAAGAGCCACCTCTTGTCACGGCAAACACCATCTTGTCTATTTTAGCTGCTGATTATCCTGTTGAGAAGCTTTCTTGCTATGTTTCTGATGATGGAGGCGCACTTTTAACTTTCGAGGCAATGGCTGAAGCTGCTAGCTTTGCTAATGTGTGGGTTCCATTCTGCCGCAAGCATGATATAGAGCCTAGGAATCCGGAATCATACTTCAACTTAAAGAGAGATCCTTACAAAAACAAAGTGAAACCTGATTTTGTGAAGGATCGTAGAAGGCTGAAGCGTGAGTATGATGAGTTCAAGGTCAGAATCAATGGTTTGCCCGAGTCTATCCGTCGCAGATCAGATGCTTTTCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTGTGAGACAAAACAGGGGAGATGAACCTGTTGAGCCTATAAAGATTCCAAAAGCAACATGGATGGCTGATGGATCTCATTGGCCTGGGACTTGGTTGAACACTTCATCCGAGCACTCTAAGGGTGACCATGCTGGCATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTTATTGGAAATGCTGATGATGCAAAGCTTATTGACTTGACTGATGTTGATATCCGTCTTCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGCCCGGGTTATGATCACAATAAAAAAGCCGGAGCCATGAATGCATTGGTCAGAGCCTCGGCCGTCATGTCCAATGGTCCTTTTATACTCAATCTTGACTGTGATCACTATATCTACAACTCCAAGGCAATGAGGGAAGGTATGTGCTTTATGATGGATCGTGGCGGTGACCGCCTCTGCTATGTCCAGTTCCCTCAAAGGTTTGAGGGGATTGATCCTTCTGATAGATATGCTAATCACAACACTGTCTTCTTTGATGTTAATATGAGAGCCCTTGACGGACTTCAAGGGCCAGTTTATGTCGGAACTGGTTGTCTGTTTAGAAGGGTTGCTCTTTATGGTTTTGACCCTCCACGTGCCAAAGAAGACCATGCAACTTTCTGTAGTTGTTGCTTTGGGCGTAATAAGAAGAAGCTTGCCAACACCTCAGAAGAGAACCGGGCACTAAAAATGGGTGACTCTGATGATGAAGAAATGAATCTTTCATCCTTTCCTAAGAAATTTGGGAACTCAAGTTTTCTTATTGACTCAATTCCAGTGGCAGAGTTCCAAGGTAGGCCACTTGCTGATCACCCTGCTGTGAAAAATGGACGCCGACCTGGCGCTCTCACCATACCCCGAGAACTTCTTGATGCATCAACTGTTGCAGAAGCCATAAGTGTGATCTCATGTTGGTATGAGGACAAGACTGAATGGGGACAGCGTGTTGGATGGATCTACGGGTCGGTTACTGAGGATGTGGTCACTGGTTATAGGATGCATAACAGAGGATGGAAATCTGTTTACTGTGTGACCAAACGCGATGCCTTCCGTGGAACTGCTCCCATCAATCTCACTGATAGGCTGCATCAGGTTCTTAGATGGGCTACTGGTTCAGTTGAGATATTCTTCTCCAGAAACAATGCAATTATGGCCAGCACAAGAATGAAATTTCTTCAAAGGATTGCATACCTTAATGTCGGAATCTATCCATTCACCTCTTTTTTCCTTATCGTCTATTGCTTCCTCCCTGCACTCTCCCTCTTCTCAGGACAGTTCATCGTTCAAAATCTCAACGTCACTTTCCTTGCCTACCTCTTGGCTATTACCTTGACTCTCTGCATTCTCGCCGTGCTTGAGATTAAATGGTCAGGAATCGAGCTGGAAGAATGGTGGAGAAACGAGCAGTTTTGGTTGATCGGAGGAACCAGTGCCCATCTAGCAGCCGTTCTTCAAGGTTTACTCAAAGTTGTAGCAGGCATTGAAATCTCATTCACACTGACTTCAAAATCTGGCGGTGATGATGTGGACGACGAGTTCGCTGATCTTTATATCGTCAAATGGTCATCCCTTATGATACCGCCAATCACAATCATGATGGTAAACTTAATAGCAATAGCTGTTGGAGTTAGCAGAACCATATACAGCACCATACCGCAGTGGAGCCGTTTACTCGGCGGCGTTTTCTTCAGCTTTTGGGTATTGGCTCATCTCTACCCTTTTGCAAAAGGTTTGATGGGAAGAAGAGGGAAGACACCTACCATTGTTTTTGTATGGTCAGGTCTAATAGCAATCATAATATCACTCCTTTGGGTGGCTATCAATCCACCAGCCGGTAGTTCCAACCAAATCGGAGGGTCCTTCCAGTTCCCATGA 3429 0.4468 MLNSKSLKISRSSLSSTSDASEANKPPLPPTVTFGRRTPSGRYISYSRDDLDSELGSHDFMNYTVHLPPTPDNQPMDTTISQKVEEQYVSSSLFTGGFNSITRAHLMDKVTESEVNHPQMAGAKGSSCGVPGCDSKVMSDERGVDILPCECDYKICRDCYIDAVKTGDGMCPGCKEPYKNTELDEVAVDDGRPLPLPPPVGASKMERRLSLMKSSKSALMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGDFGNGKDDVSEPTELMSRPWRPLTRKLKIPAAVLSPYRLIIFIRMAALVLFLHWRITHKNTDAIWLWGMSIVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLREKFELPTPENPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRLKREYDEFKVRINGLPESIRRRSDAFHAREEIKAMKVVRQNRGDEPVEPIKIPKATWMADGSHWPGTWLNTSSEHSKGDHAGIIQVMLKPPSDEPLIGNADDAKLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAVMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRAKEDHATFCSCCFGRNKKKLANTSEENRALKMGDSDDEEMNLSSFPKKFGNSSFLIDSIPVAEFQGRPLADHPAVKNGRRPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIMASTRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQNLNVTFLAYLLAITLTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVVAGIEISFTLTSKSGGDDVDDEFADLYIVKWSSLMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLIAIIISLLWVAINPPAGSSNQIGGSFQFP 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01335 1142 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 580 729 IPR029044 -
Vifa6g01335 1142 FunFam cellulose synthase-like protein D3 578 715 - -
Vifa6g01335 1142 SUPERFAMILY RING/U-box 117 182 - -
Vifa6g01335 1142 SUPERFAMILY Nucleotide-diphospho-sugar transferases 388 724 IPR029044 -
Vifa6g01335 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 192 IPR013083 -
Vifa6g01335 1142 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1111 - -
Vifa6g01335 1142 Pfam RING/Ubox like zinc-binding domain 130 179 - -
Vifa6g01335 1142 Pfam Cellulose synthase 373 1131 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa6g01335 1142 MobiDBLite consensus disorder prediction 1 41 - -
Vifa6g01335 1142 FunFam Cellulose synthase-like protein D3 111 193 - -
Vifa6g01335 1142 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01335 Vifa-Chr6 464105507 464109380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01335 1 1142 Glycosyltransferase AT3G03050 83.217 0.0 2006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01335 K20924 - gmx:100792604 2119.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01335 6 464105507 464109380 Vifa3g01078 3 278257917 278260346 ECH
Vifa6g01335 6 464105507 464109380 Vifa6g01335 6 464105507 464109380 ECH