Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01331 ATGACAGCTGGGAACGCGAGCTATGTGTTACCGCCATTCTTGAGCAAAACCTATGACATGGTTGATGACTCTTCAACTGACGCGATCGTTTCGTGGGGGAAAAACAATAACACTTTTGTTGTTTTGAATGCTACGGATTTCGCTAAATATATCTTGCCTAAGTATTTTAAGCATAACAACTTCTCCAGCTTTGTTAGGCAGTTGAATACATATGGTTTTAGAAAGGTTGACCCTGACCACTGGGAATTTGCGCATGAAGGATTTTTAAGGGGTCAAAAAGAGTTGTTGAAAACTATTAATAGGCGGAAATCTACTCAAGCAAATGGTAATAGTCAACAACCGCCTAAGGTACAGGACGCACCTGTTGGGGCATGTGTTGAGGTGGGGAAGTTTGGGATTGACGAAGAGGTTGAAAGACTGAAAAGGGATAAAAATGTTCTTATGACGGAACTTGTTAGGTTAAGACAGCAACAACAAACGACTGATAACCAATTGCAAACTGTTGGGCAACGTGTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCGTTCCTAGCAAAGGCTATGCATAGTCCTGGCTTCATGGCTCAATTTTCACAGCAGCAGACTGAAAGTAATAGACATGTCACCGGGGGTAAAAAGAGGCGGCTCCAGAGGCAGGAAGAAGAAAACTTAGCCACCAAGAATCTCCATAATCCTCTTGATGGACGTGTTGTCAAGTATCAGCCTTCAATTAATGAGACTGCAAAAGCATTATATAACCAGATGTTGCAAATGAACAACTCTACAAGGACGGAGTCCTCCATTAAGAACCCCGATGCATTCCTTATTGACGATACTCCTTCAGCCATTCCGTTAGACAGCAGTAGTTCGTCCACCCAAGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGGCAGTCATGTATGGCAGTAGAATCTCAATTTCCTGTAGGTTGTATGACTAATAGCATGTCTGAGGTACAATCTTCACCTTCTGTGTTAACTGACTGTGTCAAAGCAGCTGAATTTCCTGAATTAACAGCACATAACTTCCAAGACACTGTTTTGAATTTTGGTGAAGTTCAAGGACTGGCTACAGAGAGCAGCTTCATGAATTCTAATCAAAATTTTGTGGGGTCTGTCACTGAGAATAATGAGGAACTGGATGTGATATCAGCTGTTTTTGATGGAACACAGTCTTTGGAAACTGATGCTTTTTCTCCTGATCCGAGTGGGATTTCTAAACTTCAAGGAATCAACGAAGAGTTCTGGGATCTGTTTTTTATGCCAAGCTCACTTACCGGAGACACAGATGAAGTTAAAGGTAGCAATCTAGGATATGGTTTGACCAAGGACCAGGAATTTTCATTAGAAAAAGAGATTCCACAAGAAAATATGGATAAGAAACAACATATGGACCATCTTACTCATCAGATGGAACTTCTTGCATCAGACTCGTCATTGTGTATATAA 1485 0.4162 MTAGNASYVLPPFLSKTYDMVDDSSTDAIVSWGKNNNTFVVLNATDFAKYILPKYFKHNNFSSFVRQLNTYGFRKVDPDHWEFAHEGFLRGQKELLKTINRRKSTQANGNSQQPPKVQDAPVGACVEVGKFGIDEEVERLKRDKNVLMTELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFMAQFSQQQTESNRHVTGGKKRRLQRQEEENLATKNLHNPLDGRVVKYQPSINETAKALYNQMLQMNNSTRTESSIKNPDAFLIDDTPSAIPLDSSSSSTQVSGVTLSEVPPISGQSCMAVESQFPVGCMTNSMSEVQSSPSVLTDCVKAAEFPELTAHNFQDTVLNFGEVQGLATESSFMNSNQNFVGSVTENNEELDVISAVFDGTQSLETDAFSPDPSGISKLQGINEEFWDLFFMPSSLTGDTDEVKGSNLGYGLTKDQEFSLEKEIPQENMDKKQHMDHLTHQMELLASDSSLCI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01331 494 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Vifa6g01331 494 Coils Coil 137 157 - -
Vifa6g01331 494 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g01331 494 FunFam Heat shock transcription factor 1 6 103 - -
Vifa6g01331 494 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g01331 494 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g01331 494 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g01331 494 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 305 IPR027725 -
Vifa6g01331 494 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa6g01331 494 Gene3D - 6 103 IPR036388 -
Vifa6g01331 494 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01331 Vifa-Chr6 463651633 463654356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01331 10 490 HSF AT5G16820 49.799 1.93e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa6g01331 HSF_DNA-bind 4.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01331 K09419 - gmx:100793665 536.569