LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g01327	ATGGAGTTTTTGCTAAGTTCTACGATCCTCTTACTTCTATTACCATTCACTCTCTACTTTCTACTTTCAAAATGCACAAAAAACATGATCAAACTTCCACCAGGACCTACTCCTCTTCCTTTTATAGGAAACCTCCATCAATTAGGAAAAAAGCCTCACAAATCCTTAGCCAAATTAGCTGAAATTCACGGTCCACTCATGAGTCTTAAGTTAGGCCAGGTAACAACCATTGTTGTATCTTCACCCAACATGGCCAAACAAATACTCCAAACACATGATAATATCTTATCTAACAGAACCATTCCCGATGCTGTAAAAGTTCATGACCACCACAAATACAACATGGCGTTCTTACCAATTGCACCTCTTTGGAGAGAGTTAAGAAAAATATTCAATAATCAATTATTCTCTAGCAAAACACTTGATGAGAGTAAGGGAATCAGGCTTCAGAAACTGAAAGATTGTCTCAACGATATTACTCAAACTAGTCTTACTAATGAAGCTATTAATATTGGAGATATGGTTTTCAAGACATCAATTAATTTGTTGTCAAACACTATTTTCTCTCTAGATTTGGTTCAACCTGGTGATTCAGTAGAAGATTTTAAGGAGCTAATTTTGAATATATTGAAAGAGTGTGGAAAACCAAACATTGTTGATCTTTTTCCTGCTATAAATATGTTTGACTTTGATCTACAAGGTATTAAAGGACGTAACGCTGTTCATGCTCAGAAGGTCCTTGATATCTTTCAACGTTTAGTTGACGAAAGATTGAAGCTGAGGGAAGTACAAGGTTTTGACACAAACAAAGACATGCTAAGTAACTTGCTCAACATGGCTCAAGACAACAGCCAAGAAATGAACATTGCCAAAATCCCACATTTATTTCTGACTTTATTTATTGCTGGAACGGATACAATTTCATCTACGCTTGAATGGGCAATGGCAGAATTGCTCAAAAATGAAAATATTATGTCAAAAGCAAAACAAGAGTTAGAACAAATCATTGGCAAAGGAAAACCAATTGAAGATTCAGATATTGTTAAGCTTCCTTATTTACAAGCAATAATAAAAGAGACATTTAGACTACACCCTTCGGTTCCATTTTTACTTCCTCGAAAAGCCAATGCAAATGTGGAAATTGATGGCTACACAATCCCAAAAGATGCACAAATTTGGGTCAATGTGTGGGCTATTGGTAGAAATTCAAGTGTTTGGGAAAATGAAAATTTGTTTTCACCGGACAGATTCTTAAATTCTCAAATTGATGCTAAAGGTCACAATTTCGAGCTTCTACCATTTGGCGCTGGAAGGAGAATTTGTCCTGGTTTACCGTTAGCGACCAAGATGTTACATTTGATGTTGGGTTCATTTATCAATTGTTTTAACTGGAAATTACAAGATGGAATCAAAATACAAGATATGAACATGGAGGACAAATTTGGACTATCATTAGAGAAGTCTCAGCCGCTAAGACTTGTTCCACAAAGAATATGCAATTAG	1503	0.356	MEFLLSSTILLLLLPFTLYFLLSKCTKNMIKLPPGPTPLPFIGNLHQLGKKPHKSLAKLAEIHGPLMSLKLGQVTTIVVSSPNMAKQILQTHDNILSNRTIPDAVKVHDHHKYNMAFLPIAPLWRELRKIFNNQLFSSKTLDESKGIRLQKLKDCLNDITQTSLTNEAINIGDMVFKTSINLLSNTIFSLDLVQPGDSVEDFKELILNILKECGKPNIVDLFPAINMFDFDLQGIKGRNAVHAQKVLDIFQRLVDERLKLREVQGFDTNKDMLSNLLNMAQDNSQEMNIAKIPHLFLTLFIAGTDTISSTLEWAMAELLKNENIMSKAKQELEQIIGKGKPIEDSDIVKLPYLQAIIKETFRLHPSVPFLLPRKANANVEIDGYTIPKDAQIWVNVWAIGRNSSVWENENLFSPDRFLNSQIDAKGHNFELLPFGAGRRICPGLPLATKMLHLMLGSFINCFNWKLQDGIKIQDMNMEDKFGLSLEKSQPLRLVPQRICN	500

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g01327	500	Gene3D	Cytochrome P450	21	497	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PANTHER	CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED	10	496	-	-
	Vifa6g01327	500	Pfam	Cytochrome P450	33	483	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	434	443	IPR017972	GO:0005506\|GO:0016705
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	441	464	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	395	419	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	291	308	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	431	441	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	60	79	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vifa6g01327	500	PRINTS	E-class P450 group I signature	311	337	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g01327	Vifa-Chr6	459162232	459163824	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g01327	1	495	Cytochrome P450	AT2G45550	39.921	5.46e-147	429

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g01327	-		-	lja:Lj0g3v0208479.2	627.861

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