Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01319 ATGGAGTTTTTTCTAAGCTGTATGTTCCTCTTACTTCTATTACCATTCACTCTCTATTTTCTACTTTCTAAATACACAAAAAACACGATCAAACTTCCACCAGGACCTACTCCTCTTCCTTTTATAGGAAACCTCCATCAATTAGGAAAAAAGCCTCACAAATCCTTAGCCAAATTAGCTGAAATTCATGGTCCACTCATGAGTCTAAAGTTGGGCCAAGTTACAACCATTGTTGTCTCTTCACCCAACATGGCCAAAGAAATACTCCAAACTCATGATCATATCTTATCCAACAGAACCATTCCCGGTGCTGTAAAAGTTCATGACCACCACAAATACAACATGGCGTTCTTACCAATTGAAACTCTTTGGAGAGAGTTAAGGAAAATATGCAATAATGAATTGTTCTCTAACAAAACAATTGAAGAGAGTAAGGGAATCAGGCTTCAGAAAGTGAAAGATTGTCTCAACGATATTAATCAAAATAGTCTTATTAATGAAGCTGTTTGTATTGAAGATATGGTTTTCAAGACATCCATTAATTTGTTGTCAAACATGATTTTCTCTCTAGATTTGGTTCAACCTGGTGATTCAGTTGGAGATTTCAAGGAGCTAATTTTGAATATATTGAAAGAGTGTGGAAAACGAAACGTTACTGATCTTTTTCCTGCTATAAATGTGTTTGACTTTGATCTACAGGGTATTAAACGACGCAACGCTGTTTATGCTCGAAAAGTGTTTGATATCTGCCAGCGTTTAATTGATGAAAGAGTGAAGCTGAGGGAAGTACAAGGTTTTGACACAAAAAGTGACATGCTAAGTAACTTGCTCAACATTGATGAAGATAACAGCCAAGAGATGAACAAGGCCAAAATCCCACATTTAGCTCTGACTTTATTTATTGCTGGTACGGATACAGTTTCATCTACTCTAGAATGGGCAATGTCAGAATTGATTAAAAATGAAAAGGTTATGTCAAAGGCAAAACAAGAGTTGGAACAAATCATTGGCAAAGGAAAACCAGTTGAAGATTCAGATATTGCTAAGCTTCCTTATTTACAAGCAATAATAAAAGAGACATTTAGATTACACCCTGCTGTTCCATTTTTAGTCCCTCGAAAAGCTGATGCAAATGTGGAAATTGGTGGCTACACAATTCCAAAAGATGCACAAATTTGGGTCAATGTGTGGGCTATTGGTAGATATTCAAGTGTTTGGGAAAATCCAAACTTGTTTTCACCAGAGAGATTCTTAGACTCTAAAATTGATGCTATAGGTCACAATTTCGAGCTTTTACCATTTGGTTCTGGAAGAAGAATTTGTCCTGGTATATCGTTAGCTACAAAGATGTTACCTTTGATGTTGGGTTCATTTATCAATTGTTTTAACTGGAAACTAGAAGATGGAACAAAAGTAGAAGATATGAACATGGATGACAAGTTTGGACTATCATTAGAGAAGTCTCTGAAGCTAAGAATTGTTCCAGAAAAGGTATACAACTAG 1503 0.3586 MEFFLSCMFLLLLLPFTLYFLLSKYTKNTIKLPPGPTPLPFIGNLHQLGKKPHKSLAKLAEIHGPLMSLKLGQVTTIVVSSPNMAKEILQTHDHILSNRTIPGAVKVHDHHKYNMAFLPIETLWRELRKICNNELFSNKTIEESKGIRLQKVKDCLNDINQNSLINEAVCIEDMVFKTSINLLSNMIFSLDLVQPGDSVGDFKELILNILKECGKRNVTDLFPAINVFDFDLQGIKRRNAVYARKVFDICQRLIDERVKLREVQGFDTKSDMLSNLLNIDEDNSQEMNKAKIPHLALTLFIAGTDTVSSTLEWAMSELIKNEKVMSKAKQELEQIIGKGKPVEDSDIAKLPYLQAIIKETFRLHPAVPFLVPRKADANVEIGGYTIPKDAQIWVNVWAIGRYSSVWENPNLFSPERFLDSKIDAIGHNFELLPFGSGRRICPGISLATKMLPLMLGSFINCFNWKLEDGTKVEDMNMDDKFGLSLEKSLKLRIVPEKVYN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01319 500 FunFam Cytochrome P450 76C4 24 494 - -
Vifa6g01319 500 Gene3D Cytochrome P450 25 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 Pfam Cytochrome P450 33 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 SUPERFAMILY Cytochrome P450 33 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Vifa6g01319 500 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 497 - -
Vifa6g01319 500 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 CDD CYP76-like 60 495 - -
Vifa6g01319 500 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01319 500 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01319 Vifa-Chr6 458346037 458347705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01319 5 497 Cytochrome P450 AT2G45550 41.782 2.42e-146 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01319 - - lja:Lj0g3v0208479.2 593.193