Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01312 ATGGAGTGTTTGCCAACTTGTATGTTCCTCTTACTTCTATTACCATTCACTCTCTATTTTCTACTTTCTAAATACACAAAAAATAACTCAAACATGATCAAACTTCCACCAGGCCCTACTCCTCTTCCTTTTATAGGAAACCTCCACCAATTAGGAAAAAAGCCTCATAAATCCTTAGCCAAATTAGCTGAAATTCACGGTCCAATCATGAGTCTAAAGCTAGGTCAAGTAACAACCATAGTTGTATCTTCACCCAACATGGCAAAACAAATACTCCAAACACATGATCATATCTTATCTAACAGAACAATTCCAAATGCTGTAACAGTTCATGATCACCACAAATATAGCATGACATTCTTACCCGTTTCACCTCTTTGGAGAGACTTAAGAAAAATATGTAGTAATCAATTATTCTCTAACAAGACACTTGATGAGAGTAAGGGAATTAGGCTTCAGAAACTGAAAGAATTACTCAATGATATTAATCAAAGTAGTCTTGTTCATGAAGCTGTTGATATTAGAAATATGGCTTTTAAGACATCGATTAATTTGTTGTCGAATACTATTTTCTCTTTAGATTTGGTTGAGTCTGCTGGTTCAGTTGGAGATTTCAAGGAGCTAGTTGTGAATATAATGGAAGAGTGTGGAAAACCAAACATTGCAGATCTTTTTCCTGCACTTAGGATGTTTGACCCACAAGGTATTAAAGCTCGCACCTCTGCTTCTGCTGGGAAGATCCTTGATATCTTTCAACGTTTAGTTGACGAAAGATTGAAGCTGAGGGAAGTACAAGGTTTCGACACAAACAATGACATGCTAAATACCTTGCTCAACATTGCCCAAGACAGCAGCCAAAAAGATATGAACAAAATAAAAATCCAACATTTATCTCTGACTTTATTTGTTGCTGGTACGGATACAATTTCATCTACGATAGAATGGGCAATGGCAGAATTGCTCAAAAATGAAAATATTATGTCAAAAGCAAAACAAGAGTTGGAACAAATCATTGGCAAAGGAAAACCAGTTGAAGATTCAGATATTGCTAAGCTTCCTTATTTACAAGCAATAATAAAAGAGACTTTTAGATTACACCCTGCTGTTCCATTTTTAGTCCCTCGAAAAGCCAATGCAAATGTGGAAATTGAAGGCTACACAATTCCAAAAGATGCACAAATTTGGGTCAATGTGTGGGCTATTGGTAGATATTCAAGTGTTTGGGAAAATCCAAACTTGTTTTCACCAGACAGATTTTTAAAATCTAAAATTAATATTAAAGGTCACAATTTCGAGCTTACGCCGTTTGGTGCTGGAAGGAGAATTTGTCCTGGTTTGTTGTTAGCTACAAAGGTATTGTATTTGATATTAGGTTCATTAATCAATTGTTTTAATTGGAAAGTTGATGATAAGACGACAATTGATGACATGTACATGGAGGATAAATTTGGAATCACATTAGATAAAGCTCAACCACTAAGGGTCATTCCAGAAAAAGTATGCAACTAG 1509 0.3539 MECLPTCMFLLLLLPFTLYFLLSKYTKNNSNMIKLPPGPTPLPFIGNLHQLGKKPHKSLAKLAEIHGPIMSLKLGQVTTIVVSSPNMAKQILQTHDHILSNRTIPNAVTVHDHHKYSMTFLPVSPLWRDLRKICSNQLFSNKTLDESKGIRLQKLKELLNDINQSSLVHEAVDIRNMAFKTSINLLSNTIFSLDLVESAGSVGDFKELVVNIMEECGKPNIADLFPALRMFDPQGIKARTSASAGKILDIFQRLVDERLKLREVQGFDTNNDMLNTLLNIAQDSSQKDMNKIKIQHLSLTLFVAGTDTISSTIEWAMAELLKNENIMSKAKQELEQIIGKGKPVEDSDIAKLPYLQAIIKETFRLHPAVPFLVPRKANANVEIEGYTIPKDAQIWVNVWAIGRYSSVWENPNLFSPDRFLKSKINIKGHNFELTPFGAGRRICPGLLLATKVLYLILGSLINCFNWKVDDKTTIDDMYMEDKFGITLDKAQPLRVIPEKVCN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01312 502 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 CDD CYP76-like 63 497 - -
Vifa6g01312 502 SUPERFAMILY Cytochrome P450 36 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 Pfam Cytochrome P450 36 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vifa6g01312 502 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 Gene3D Cytochrome P450 20 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g01312 502 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 12 499 - -
Vifa6g01312 502 FunFam Cytochrome P450 76C4 27 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01312 Vifa-Chr6 456903382 456904985 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01312 1 499 Cytochrome P450 AT2G45550 42.801 1.83e-153 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01312 - - lja:Lj0g3v0208479.2 656.366