Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01309 ATGATGGGTAGAGCACCATGCTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACATCAGAAGAGGATAGAATATTGGTGGATCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGTTAGCAAGATTGAATAGGTGTGGGAAGAGTTGCAGATTAAGATGGACTAACTATTTAAGACCTGATATCAAAAGAGGAAAATTCACAGAAGAAGAAGAGAAAACCATCATCAATTTACACGCTGTTCTTGGAAACAAGTGGTCAGCTATAGCAGGTCATCTACCAGGGAGGACTGACAATGAAATAAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCAGTTACTCATCGTCCAAGAATCGATCACCTCAATCTTATCGCCAATCTTCAACACTTTCTTGCTGCAAACGTCATCAACAATTTATCAAACACTTTCAACATGACTACTAATAATGCTCTAAGGCTTCAATCAGATGCAGCCAAACTCCAACTGCTTCAAAACATGCTTCAAATTCAAGCCCTCAGTAGCAACAATACTCCTTCTACTTCAAACTTTGATTTACTCAATATCAATCCGTTTGTACAATATCCATCTTCTTCATCGCAGCAAGAAAGTTTGTTTCAGAATGAACTTTTTGGATTGAATATTCAGTCCAATTTTCAAGGCTTTGAAGTACCTCAGATGCTGAATGGTGTAACCAATGGATATGATTATATGAATTATGCTTATGACAGCAATAGTAGTAGTTGTTTGAAAACTGATCAAAAGGTTGATGAACTATTTGATGTTACAACAAACTCTTCTTCGATGGTACCGATGAATTCGCTTCCAAATTTGATTTCGGTTTCACAAGAATGTTCTAATGTGAAAGAGATAATAGAAAATAATAAGGTTAACCAAAACGAGTGTTCTACTGATCCTTCTTCAACTTCAACTACCTTTGAAATATTAGAAGATTTCATTTATGAAGACCTAAGCGAAGTTTATTGGAAAGATGTCCAAGAGTCTAATGAGTAA 1050 0.361 MMGRAPCCDESGLKKGPWTSEEDRILVDHIQKHGHGSWRALPKLARLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLIANLQHFLAANVINNLSNTFNMTTNNALRLQSDAAKLQLLQNMLQIQALSSNNTPSTSNFDLLNINPFVQYPSSSSQQESLFQNELFGLNIQSNFQGFEVPQMLNGVTNGYDYMNYAYDSNSSSCLKTDQKVDELFDVTTNSSSMVPMNSLPNLISVSQECSNVKEIIENNKVNQNECSTDPSSTSTTFEILEDFIYEDLSEVYWKDVQESNE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01309 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa6g01309 349 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa6g01309 349 Gene3D - 14 67 - -
Vifa6g01309 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vifa6g01309 349 FunFam MYB-related transcription factor 14 67 - -
Vifa6g01309 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa6g01309 349 SMART sant 14 64 IPR001005 -
Vifa6g01309 349 SMART sant 67 115 IPR001005 -
Vifa6g01309 349 Gene3D - 70 117 - -
Vifa6g01309 349 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vifa6g01309 349 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vifa6g01309 349 FunFam Transcription factor MYB39 70 131 - -
Vifa6g01309 349 CDD SANT 70 113 IPR001005 -
Vifa6g01309 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 272 - -
Vifa6g01309 349 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vifa6g01309 349 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01309 Vifa-Chr6 455296403 455298051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01309 2 346 MYB Transcription Factor Family AT5G16770 49.030 6.79e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g01309 Myb_DNA-binding 3.8e-14 CL0123