Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01303 ATGAAAGAGCTCTGTAGAAATTTCCAGCGAGGCAGTTGTACTTATGGAGAAAGGTGTAGATTTCTTCATCAACAACCAAATCAACAGCAGCGAAAATCTAATGCTTTTGGAGGACAGACCAATTCATACCAACAACCGAATAAAAACCCTTTTGGATTTGGGTCTGCTTCTGCCTCTGCTCCCAACCAACAACAAAAGAACAACCCTTTTGGTTTTGGATCACAAAACACATCTCATTCAAATGGGCCCCCTAAACCAAACCAATTCCAGCCTTTTGAAAACAAATGGAGTCGAACGTCATCCAAACCCCAGAATGGCACTCAACGTCCCTCTGATAACAATTCCCAACCAGTGAATCATAAATGCACAGATCCTGAGATTTGCAAGCGCCAGATTGCAGATGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGTGCTCCTTGTGACATTATTGGAGATATTAGCTATGAAGAATTAAGGGCATCGGCATACGAGGATGCTAAGAAAGGAATGAGTTTGCCATTAATTGTTGAAAAGGAGAGAAACATACTAAAATCAAAGTTGGCTGAGTTTGACAAACTGCTCTCCGAACCCTACAAAATGCCTCTGAATTCTTCTCTTGACATTCAAAAGTACCAACCTAATGGAGCCAATGCAAATGCATTTTCACCAGCTACTCAAAATAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGGTGTGAAAGGCCCTCTGCACCACAAATGACCACTCCAGCCCAGCCTAATTCCTTTGGAAGTGGAGGAAACATATTCGGCAGTGGAATCTCAGGTGCTCAAAACAACAACCCCTTTTCTACTCCAGCGACAATGTTTCCAGGATCAACTTCTCAATTCCAACAAACATCCACTGCGTTCAACAACACTAGCTCCACCACAATGCTTCAGTCAGCATCATCAGATGTTCAGTTAAATACGTCCCAAGTGGAGAATGCGTCCGTAGATGAAAGTATCTGGTTAAAGGAGAAATGGAATCCTGGAGAGATTCCCGAAGAAGCTCCTCCAGACAGATTTATTCGAGGTATATCAACTGATGAATGA 1125 0.4249 MKELCRNFQRGSCTYGERCRFLHQQPNQQQRKSNAFGGQTNSYQQPNKNPFGFGSASASAPNQQQKNNPFGFGSQNTSHSNGPPKPNQFQPFENKWSRTSSKPQNGTQRPSDNNSQPVNHKCTDPEICKRQIADDFEQEKPLWILTCYGHCKGAPCDIIGDISYEELRASAYEDAKKGMSLPLIVEKERNILKSKLAEFDKLLSEPYKMPLNSSLDIQKYQPNGANANAFSPATQNNGPLSVSSFSQLGASLNTGCERPSAPQMTTPAQPNSFGSGGNIFGSGISGAQNNNPFSTPATMFPGSTSQFQQTSTAFNNTSSTTMLQSASSDVQLNTSQVENASVDESIWLKEKWNPGEIPEEAPPDRFIRGISTDE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01303 374 SMART c3hfinal6 2 25 IPR000571 GO:0046872
Vifa6g01303 374 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Vifa6g01303 374 MobiDBLite consensus disorder prediction 255 305 - -
Vifa6g01303 374 MobiDBLite consensus disorder prediction 25 121 - -
Vifa6g01303 374 MobiDBLite consensus disorder prediction 353 374 - -
Vifa6g01303 374 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Vifa6g01303 374 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 75 298 - -
Vifa6g01303 374 Gene3D - 1 54 - -
Vifa6g01303 374 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01303 Vifa-Chr6 453921552 453932336 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g01303 zf-CCCH_4 6.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01303 K14321 - gmx:100814339 462.996