Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01302 ATGAAAGAGCTCTGTAGAAATTTCCAGCGAGGCAGTTGTACTTATGGAGAAAGGTGTAGATTTCTTCATCAACAACCAAATCAACAGCAGCGAAAATCTAATGCTTTTGGAGGACAGACCAATTCATACCAACAACCGAATAAAAACCCTTTTGGATTTGGGTCTGCTTCTGCCTCTGCTCCCAACCAACAACAAAAGAACAACCCTTTTGGTTTTGGATCACAAAACACATCTCATTCAAATGGGCCCCCTAAACCAAACCAATTCCAGCCTTTTGAAAACAAATGGAGTCGAACGTCATCCAAACCCCAGAATGGCACTCAACGTCCCTCTGATAACAATTCCCAACCAGTGAATCATAAATGCACAGATCCTGAGATTTGCAAGCGCCAGATTGCAGATGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGTGCTCCTTGTGACATTATTGGAGATATTAGCTATGAAGAATTAAGGGCATCGGCATACGAGGATGCTAAGAAAGGAATGAGTTTGCCATTAATTGTTGAAAAGGAGAGAAACATACTAAAATCAAAGTTGGCTGAGTTTGACAAACTGCTCTCCGAACCCTACAAAATGCCTCTGAATTCTTCTCTTGACATTCAAAAGTACCAACCTAATGGAGCCAATGCAAATGCATTTTCACCAGCTACTCAAAATAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGGTGTGAAAGGCCCTCTGCACCACAAATGACCACTCCAGCCCAGCCTAATTCCTTTGGAAGTGGAGGAAACATATTCGGCAGTGGAATCTCAGGTGCTCAAAACAACAACCCCTTTTCTACTCCAGCGACAATGTTTCCAGGATCAACTTCTCAATTCCAACAAACATCCACTGCGTTCAACAACACTAGCTCCACCACAATGCTTCAGTCAGCATCATCAGATGTTCAGTTAAATACGTCCCAAGTGGAGAATGCGTCCGTAGATGAAAGTATCTGGTTAAAGGAGAAATGGAATCCTGGAGAGATTCCCGAAGAAGCTCCTCCAGACAGATTTATTCGGTAG 1107 0.4273 MKELCRNFQRGSCTYGERCRFLHQQPNQQQRKSNAFGGQTNSYQQPNKNPFGFGSASASAPNQQQKNNPFGFGSQNTSHSNGPPKPNQFQPFENKWSRTSSKPQNGTQRPSDNNSQPVNHKCTDPEICKRQIADDFEQEKPLWILTCYGHCKGAPCDIIGDISYEELRASAYEDAKKGMSLPLIVEKERNILKSKLAEFDKLLSEPYKMPLNSSLDIQKYQPNGANANAFSPATQNNGPLSVSSFSQLGASLNTGCERPSAPQMTTPAQPNSFGSGGNIFGSGISGAQNNNPFSTPATMFPGSTSQFQQTSTAFNNTSSTTMLQSASSDVQLNTSQVENASVDESIWLKEKWNPGEIPEEAPPDRFIR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01302 368 SMART c3hfinal6 2 25 IPR000571 GO:0046872
Vifa6g01302 368 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Vifa6g01302 368 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Vifa6g01302 368 MobiDBLite consensus disorder prediction 25 121 - -
Vifa6g01302 368 Gene3D - 1 54 - -
Vifa6g01302 368 MobiDBLite consensus disorder prediction 255 308 - -
Vifa6g01302 368 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 75 298 - -
Vifa6g01302 368 Pfam CCCH-type zinc finger 4 23 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01302 Vifa-Chr6 453921552 453932233 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g01302 zf-CCCH_4 6.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01302 K14321 - gmx:100814339 462.996