Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01300 ATGGGAGGTTATGAAGAGGAAAACAAATGGCCTTTATGGTTGCAACCACTTCTTCAAACCAGTTTCTTTGTTCAATGCAAAGTCCACTCAGATTCTCACAAGAGTGAATGTAACATGTTTTGTTTGGATTGTATTAATGGAGCCCTTTGTTCTGCTTGTCTTGCTTCTCACAAACATCACAGAACAATTCAGATAAGGCGATCTTCATACCATGATGTGATAAGGGTTTCTGAGATACAGAAATTTCTGGACATAACAGAAGTTCAAACTTATGTTATAAACAGTGCAAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCTGGAAAAGGGGTCACCAATACTTGCCAAGTCTGTGAAAGAAGCCTCCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTGAGGAAGAATAATGGGTCTGATGGTGAAGAGTCAATGAATGGCATTAGCAATGGAAGTGGAAGAAACAGAATTCATAGCTTTACACCTTCAACACCACCTCCAACAGTGGTGAATTACAGATCAGTTAAAAGGAGGAAAGGTGTTCCACATAGATCTCCAATGGGTGGAGGAATCATTATAGAATACTAA 621 0.3961 MGGYEEENKWPLWLQPLLQTSFFVQCKVHSDSHKSECNMFCLDCINGALCSACLASHKHHRTIQIRRSSYHDVIRVSEIQKFLDITEVQTYVINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKKLRKNNGSDGEESMNGISNGSGRNRIHSFTPSTPPPTVVNYRSVKRRKGVPHRSPMGGGIIIEY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01300 206 MobiDBLite consensus disorder prediction 151 181 - -
Vifa6g01300 206 MobiDBLite consensus disorder prediction 145 181 - -
Vifa6g01300 206 Pfam PLATZ transcription factor 66 137 IPR006734 -
Vifa6g01300 206 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01300 Vifa-Chr6 453432441 453433958 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa6g01300 PLATZ 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01300 - - gmx:100792668 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01300 6 453432441 453433958 Vifa1g08162 1 1274831069 1274832685 ECH
Vifa6g01300 6 453432441 453433958 Vifa6g01300 6 453432441 453433958 ECH