Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01292 ATGGGATGTATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAATGAAAGTACCTCAAAGAAATTGCAATCAAGTAGCACAAGAACTTCAGAGTTGAATGTTTTGAGGTTGAGTTCTTCCAAGAGGGTTGAAAGTGGAGGTGATGTGAAAGTGAGATCGAATGGATCAGTGCAGTTGTATGATGATCAAAATGGGAGGAAGAAGAAAATTGAAAAGCATGAATTCACTGATGTTGATCATCCTGGATTTGGAAGGGTTCCGAAGGCTATAGAAGCCGAACAAGTTGCGGCTGGATGGCCGGCCTGGCTTTCTTCTGTTGCTGGTGAGGCTATCAAAGGATGGATACCGCGAAGTGCAACTACTTTCGAGAGGTTACATAAAATTGGGCAGGGAACTTATAGTACGGTTTATAAGGCTCGTGACGTAACTAATCAGAAGATTGTTGCATTGAAGAGGGTGCGGTTTGATAATCTTGATCCCGAGAGTGTCAAGTTTATGGCAAGAGAGATACATATTTTGCGTAGGCTCGACCATCCAAACATAATAAAACTGGAGGGTTTGATAACCTCGGAAACATCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATTTAACAGGACTTGCAGCAAATCCTACCATCAAATTCTCTGAACCACAGCTGAAATGCTACATGCATCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTTCTTCATCGCGACATAAAGGGATCAAATCTTCTCATTGACAACAATGGTGTTTTAAAGATTGCCGATTTTGGTTTGGCGAATGTTTTTGACTCCCATCACAATATTCCATTGACAAGCCGCGTGGTAACACTGTGGTACAGACCGCCCGAGCTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGCATTCTGGGGGAACTATATACGGGCCGACCCATTTTGCCAGGAAAAACCGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCGTCTGAGGACTATTGGCTTAAGTTGCGGTTGTCACATTCAACAGTATTCAAGCCTCCACACCATTATAGACGATGTGTTACAGATACGTTTAAGGAATACTCATCAACTGCTCTTAAACTTATAGAGACCCTACTTTCTGTAGATCCCTCAAATCGAGGAACGGCAGCTGCTGCTCTGAAAAGTGAGTTCTTCACATCAGAACCTTTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGATGCTAAAATGCGAGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGATAGGGAACAAAAAGTTGGCTCATCGGTTAGACAAGAAAAAGCACCTAGGGCCGTTGTCTCAACAAAAGACAACGCCGACATGGGCGCATCGGTACAGCAGAAACACTATTCCTTCTCAAAGAACCGAAGCGAACTGTCCTACCCGCATAGAGAACATGTGCCTGGGATTGCAGGCTTCCCACACAAACAATCAGAAGATGCTAGAGAAATGGAAAATAACGTATCCGGCCATTTTTATAAGAGACCTTCACATTCGGGTCCATTGGCTCCTGGTTCAGCAGGCTGGGCAAGGGGCGTGAAGGAAGTTGATAATGGGCCTACTGTTCCAAACAGAGTTAACCTATCAAAACTATCTGGGCTAGTAGCGTCTAGGACTTTGTCGTCTGAAGATCAGGAGCCAAAACCAGTTCCCTTTCCCCACAGAAAACCAATCGAAGTAAGAAAATCCGTCGAGGCGACAAGTGGGTCGGAGTCAAGAAGAAGACGGGATAAAAAACGGATTGCTGATCACAGTCAAATTGTAAATAGAAGAGTCCCAACCGAAAAATCAACTCCGGATGGACATGGATCGAGTGGAAACAAAATATACATGTCAGGTCCATTACTGGCTTCTTCAAACAACATGGATCAGATGCTGAAAGACCACGATCGTAAGATCCAAGAGTTTTCAAGACGAGCAAGAGGCGAGAAAGTCCGTGCACAAAGAAAGTAG 2043 0.44 MGCICSKSSAVEDSNESTSKKLQSSSTRTSELNVLRLSSSKRVESGGDVKVRSNGSVQLYDDQNGRKKKIEKHEFTDVDHPGFGRVPKAIEAEQVAAGWPAWLSSVAGEAIKGWIPRSATTFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHILRRLDHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLAANPTIKFSEPQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLSHSTVFKPPHHYRRCVTDTFKEYSSTALKLIETLLSVDPSNRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEATRRQGAVGDREQKVGSSVRQEKAPRAVVSTKDNADMGASVQQKHYSFSKNRSELSYPHREHVPGIAGFPHKQSEDAREMENNVSGHFYKRPSHSGPLAPGSAGWARGVKEVDNGPTVPNRVNLSKLSGLVASRTLSSEDQEPKPVPFPHRKPIEVRKSVEATSGSESRRRRDKKRIADHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASSNNMDQMLKDHDRKIQEFSRRARGEKVRAQRK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01292 680 MobiDBLite consensus disorder prediction 568 680 - -
Vifa6g01292 680 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01292 680 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 1 28 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 578 620 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 433 463 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 433 453 - -
Vifa6g01292 680 Gene3D Transferase(Phosphotransferase) domain 1 205 445 - -
Vifa6g01292 680 CDD STKc_CDK9_like 122 406 - -
Vifa6g01292 680 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 628 653 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 523 556 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 8 28 - -
Vifa6g01292 680 MobiDBLite consensus disorder prediction 654 672 - -
Vifa6g01292 680 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01292 680 PANTHER CELL DIVISION PROTEIN KINASE 121 412 - -
Vifa6g01292 680 SUPERFAMILY Protein kinase-like (PK-like) 117 414 IPR011009 -
Vifa6g01292 680 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Vifa6g01292 680 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Vifa6g01292 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vifa6g01292 680 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01292 Vifa-Chr6 451006669 451009689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01292 114 459 Core Cell Cycle Gene Families AT5G10270 47.238 1.37e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa6g01292 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01292 - - gmx:100807590 1079.7