Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01291 ATGGGATGTATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAATGAAAGTACCTCAAAGAAATTGCAATCAAGTAGCACAAGAACTTCAGAGTTGAATGTTTTGAGGTTGAGTTCTTCCAAGAGGGTTGAAAGTGGAGGTGATGTGAAAGTGAGATCGAATGGATCAGTGCAGTTGTATGATGATCAAAATGGGAGGAAGAAGAAAATTGAAAAGCATGAATTCACTGATGTTGATCATCCTGGATTTGGAAGGGTTCCGAAGGCTATAGAAGCCGAACAAGTTGCGGCTGGATGGCCGGCCTGGCTTTCTTCTGTTGCTGGTGAGGCTATCAAAGGATGGATACCGCGAAGTGCAACTACTTTCGAGAGGTTACATAAAATTGGGCAGGGAACTTATAGTACGGTTTATAAGGCTCGTGACGTAACTAATCAGAAGATTGTTGCATTGAAGAGGGTGCGGTTTGATAATCTTGATCCCGAGAGTGTCAAGTTTATGGCAAGAGAGATACATATTTTGCGTAGGCTCGACCATCCAAACATAATAAAACTGGAGGGTTTGATAACCTCGGAAACATCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATTTAACAGGACTTGCAGCAAATCCTACCATCAAATTCTCTGAACCACAGCTGAAATGCTACATGCATCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTTCTTCATCGCGACATAAAGGGATCAAATCTTCTCATTGACAACAATGGTGTTTTAAAGATTGCCGATTTTGGTTTGGCGAATGTTTTTGACTCCCATCACAATATTCCATTGACAAGCCGCGTGGTAACACTGTGGTACAGACCGCCCGAGCTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGCATTCTGGGGGAACTATATACGGGCCGACCCATTTTGCCAGGAAAAACCGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCGTCTGAGGACTATTGGCTTAAGTTGCGGTTGTCACATTCAACAGTATTCAAGCCTCCACACCATTATAGACGATGTGTTACAGATACGTTTAAGGAATACTCATCAACTGCTCTTAAACTTATAGAGACCCTACTTTCTGTAGATCCCTCAAATCGAGGAACGGCAGCTGCTGCTCTGAAAAGTGAGTTCTTCACATCAGAACCTTTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGATGCTAAAATGCGAGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGATAGGGAACAAAAAGTTGGCTCATCGGTTAGACAAGAAAAAGCACCTAGGGCCGTTGTCTCAACAAAAGACAACGCCGACATGGGCGCATCGGTACAGAAACACTATTCCTTCTCAAAGAACCGAAGCGAACTGTCCTACCCGCATAGAGAACATGTGCCTGGGATTGCAGGCTTCCCACACAAACAATCAGAAGATGCTAGAGAAATGGAAAATAACGTATCCGGCCATTTTTATAAGAGACCTTCACATTCGGGTCCATTGGCTCCTGGTTCAGCAGGCTGGGCAAGGGGCGTGAAGGAAGTTGATAATGGGCCTACTGTTCCAAACAGAGTTAACCTATCAAAACTATCTGGGCTAGTAGCGTCTAGGACTTTGTCGTCTGAAGATCAGGAGCCAAAACCAGTTCCCTTTCCCCACAGAAAACCAATCGAAGTAAGAAAATCCGTCGAGGCGACAAGTGGGTCGGAGTCAAGAAGAAGACGGGATAAAAAACGGATTGCTGATCACAGTCAAATTGTAAATAGAAGAGTCCCAACCGAAAAATCAACTCCGGATGGACATGGATCGAGTGGAAACAAAATATACATGTCAGGTCCATTACTGGCTTCTTCAAACAACATGGATCAGATGCTGAAAGACCACGATCGTAAGATCCAAGAGTTTTCAAGACGAGCAAGAGGCGAGAAAGTCCGTGCACAAAGAAAGTAG 2040 0.4397 MGCICSKSSAVEDSNESTSKKLQSSSTRTSELNVLRLSSSKRVESGGDVKVRSNGSVQLYDDQNGRKKKIEKHEFTDVDHPGFGRVPKAIEAEQVAAGWPAWLSSVAGEAIKGWIPRSATTFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHILRRLDHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLAANPTIKFSEPQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLSHSTVFKPPHHYRRCVTDTFKEYSSTALKLIETLLSVDPSNRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEATRRQGAVGDREQKVGSSVRQEKAPRAVVSTKDNADMGASVQKHYSFSKNRSELSYPHREHVPGIAGFPHKQSEDAREMENNVSGHFYKRPSHSGPLAPGSAGWARGVKEVDNGPTVPNRVNLSKLSGLVASRTLSSEDQEPKPVPFPHRKPIEVRKSVEATSGSESRRRRDKKRIADHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASSNNMDQMLKDHDRKIQEFSRRARGEKVRAQRK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01291 679 MobiDBLite consensus disorder prediction 577 619 - -
Vifa6g01291 679 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01291 679 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 1 28 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 627 652 - -
Vifa6g01291 679 PANTHER CELL DIVISION PROTEIN KINASE 121 412 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 433 463 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 433 453 - -
Vifa6g01291 679 Gene3D Transferase(Phosphotransferase) domain 1 205 445 - -
Vifa6g01291 679 CDD STKc_CDK9_like 122 406 - -
Vifa6g01291 679 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 653 671 - -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 8 28 - -
Vifa6g01291 679 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01291 679 SUPERFAMILY Protein kinase-like (PK-like) 117 414 IPR011009 -
Vifa6g01291 679 MobiDBLite consensus disorder prediction 567 679 - -
Vifa6g01291 679 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Vifa6g01291 679 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
Vifa6g01291 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vifa6g01291 679 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01291 Vifa-Chr6 451006669 451009689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01291 114 459 Core Cell Cycle Gene Families AT5G10270 47.238 1.14e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa6g01291 Pkinase 3.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01291 - - gmx:100807590 1074.31