Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01277 ATGTCGCTGCAAACTCTAAAGGAAACACTCACACGCTGCACAACCCAACAACAATTACAACCATCTTCTTCTTCTTCTACTCTCCGCGATTTCGGTTCCCGTTTCCCAATCCTTCGAAAACCCCCTAAATCCTCTCTTGCCCAACAGTTTCGCCTCCTTCAACACCCGGACGACCCACCCTTTCTCCCACACACCTTCCTTTCACAACAAAACCAATCCAAAACCCAACAACACGTTCAACTAGAAGAACAAGAAGAAGAAGACCAAGAGCCAGAGACAAAGAGGGTGAAATTCAGTTCAGCCAAATCCTCTCAGTTTCAATTCGATCATACTGGACCCTTTGAGCCTTTGCTCTTGTCCTCTGATGGAGAATTTCCTATAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTCAGCATCAGAGACTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAAGAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACAATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGAGTCTGTTCTCAGTGAGAAGCAAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCGGTTATTCACAACTGGGAGAGTGAATTTTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCGAACCGCGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTATAGGATTCATGGCAACAGTTCTTTGTCAAATATCCACTGGAACATTGTGATTATTGACGAGGCCCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCCACGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATCTCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGTGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAGCACCTTGTTGTGGTTCTTAATAAATTTATGTTGAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATTTGCAAAAACGTGTTTATAGGAGAATGATCCAGCTTCCTGACATTCAATGCCTTATAAATAAAGACCGACCTTGTAGTTGCGGTAGCCCTCTTACTCAAGTTGAGTGTTGCAAAAGAATAGTACCCGATGGAGCTATGTGGCCTTACCTTCACAAAGATAACCCCGATGGATGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTCGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAAAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTATATGGCCCAGACATTGACTTAGTTGGCGGGAGCATGCAGAATGAGAGTTTCATGGGTCTAAGCGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTGTCATGGTTTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCGACACCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCTAGCAAACAAGTGTTCCTGATATCTACTCGAGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCTTTTCGATATGGACAGAGACGGCATGTAGTGGTATTTCGTCTCCTCGCAGCTGGTTCACTTGAAGAACTTGTTTACTCTCGTCAGATTTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGTAAGGAATTTACAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGCGAAATCGTTGAACTGCATGAGACGCGTAAAAAAGACGGACTTAAAACAGAACATGAAAAAATAAAAATGTCAGAAGAAACTGGTTTATCAGAATCAGATTCTGAAACCAGGTTATGTGATGAATCTACGGGTGCTTCAACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATTGTTTACGCTCATCGCAACGAAGACATTGTCAACTCCCGGCCAGCGATTCAAGGGCAGTTATCTACCGACGGCGCCCCTTCAAGTGATAGCTTATCAAACATGTCTTTAGTCCATCAAAGGAAAAAACCAGATTGTGTACCTAAAAAACAGAAAATCCCTTTGATTGATGAAAGGAAGAGAGCCCAATTTAGCCTCCTGGCGAAGTCTATGGGAATGGATGAGCTTGCATTTAGCAAATGGTTACTATCTGCAACTCCAGTAGAGCGAGAAAAAGTGCTTATAGACTACAATAAGAAAAAGAAAAAGCTTAAAGGTTGA 2637 0.416 MSLQTLKETLTRCTTQQQLQPSSSSSTLRDFGSRFPILRKPPKSSLAQQFRLLQHPDDPPFLPHTFLSQQNQSKTQQHVQLEEQEEEDQEPETKRVKFSSAKSSQFQFDHTGPFEPLLLSSDGEFPIVQVPASINCRLLQHQRLGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAIFGKEGESVLSEKQVEKRDPVLIICPSSVIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNSSLSNIHWNIVIIDEAHRLKNEKSKLYKACLEIKTPRRYGLTGTVMQNKILELFNLFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVVVLNKFMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDRPCSCGSPLTQVECCKRIVPDGAMWPYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQVKDAKFAAAVYGPDIDLVGGSMQNESFMGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQRRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFTGELFGICNLFRDLSDKLFTSEIVELHETRKKDGLKTEHEKIKMSEETGLSESDSETRLCDESTGASTSKPDIEFEDLGIVYAHRNEDIVNSRPAIQGQLSTDGAPSSDSLSNMSLVHQRKKPDCVPKKQKIPLIDERKRAQFSLLAKSMGMDELAFSKWLLSATPVEREKVLIDYNKKKKKLKG 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01277 878 MobiDBLite consensus disorder prediction 727 752 - -
Vifa6g01277 878 MobiDBLite consensus disorder prediction 1 42 - -
Vifa6g01277 878 Gene3D - 119 371 IPR038718 -
Vifa6g01277 878 PANTHER SNF2/RAD54 FAMILY MEMBER 45 805 - -
Vifa6g01277 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
Vifa6g01277 878 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Vifa6g01277 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 696 IPR027417 -
Vifa6g01277 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 322 IPR014001 -
Vifa6g01277 878 MobiDBLite consensus disorder prediction 727 761 - -
Vifa6g01277 878 Coils Coil 67 87 - -
Vifa6g01277 878 MobiDBLite consensus disorder prediction 72 101 - -
Vifa6g01277 878 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g01277 878 SMART ultradead3 134 330 IPR014001 -
Vifa6g01277 878 SMART helicmild6 557 640 IPR001650 -
Vifa6g01277 878 CDD SF2_C_SNF 525 651 - -
Vifa6g01277 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 372 IPR027417 -
Vifa6g01277 878 Gene3D - 384 750 IPR027417 -
Vifa6g01277 878 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 120 371 - -
Vifa6g01277 878 Pfam SNF2-related domain 154 412 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01277 Vifa-Chr6 446389396 446393525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01277 582 683 RAD5 or RAD16-like Gene Family AT3G16600 37.255 4.96e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa6g01277 SNF2_N 1.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01277 K20098 - gmx:100781003 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01277 6 446389396 446393525 Vifa6g01277 6 446389396 446393525 ECH