Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01258 ATGGAGATGGAAATAATGTCAAGAGACTTCATCAAACCCTCAACACCAACTCCTCCACACCTTAGAAATTTCCCCATCTCTTTCATAGATCACATCACTTTCCGTTACTATGTGCCTTTACTTTTCTTCTACAATGATACCAAACTTTGTGACCAACAATCCAAAATCTCACACCTCAAAAGTTCTTTATCTCGAACTCTATCCATGTACTACCCCTTTGCTGGCAGGTTCAAAGATCAACGTTCCATCGAATGCAATGACAAAGGTGTGCCATTTCTAGTTGCAAATATCATAAGAATAAAATTATCAACAATACTCGAAAACCCTAACGAAAAGTTACTTAACCTTTTGTTTCCTGACGATCTACAATGGAAAATGATGGAATGGAATGAAAGTATTTTAATCTTTCAAATAAATTGTTTTCCATGTGGAGGAATCGTGATAAGCGTGTGTGCATGTCACAAAATTATAGATACTACAACCGCTTTCAATTTTATGAACGACTGGTCTAAACTGAACCGCGAACAAGAATTAGAGTCAAAGTCAACATCAGCGTCATTGTTACCCTACAATCTACTTTGTGCTGGAGATACAATATTTTCACTAGGGAATTTACCAAATTTTCCTGAAGTTGATTTTGTGATAGAAAAAACAATAGTGCGCAAAAGGTTTGTGTTTGAAGCATCTAAGTTAAAGTTACTTAAAAACCTCGTAAATTTTAATTCTCACGTTGTTGAAAATCCCACGCGTGTAGAAGTTGTCACTGCATTGATTTACAAGTGCATGGTTTCTACATTAGGATTAAATTTCAAAACGACATCGCTTCAAATGGCGGTAAATCTTCGCACAAGAATGAATCCTCCATTATCTAATAAGTGTGTAGGGAATTTAGTTTGGATCTTGTTTGTTATAAACCCGGAACTACATGATTTGGAATTCAGAATTAGACAAGGATTACGTGAGTTTTGTGAGGTTTATCTTAAGAAACTGGGAGGTAAGGAAAAGGACTTGTCATTTATTTGTGAATGCTTAAAACAACTTACTACTACAGTTTCGAAGAGTGATAATAATCAGAGTTTAATTGCTTTTGCTAGTTGGTGTAAGTTTCCAATGTATGAAGCTGATTTTGGGTGGGGAAAACCAACATGGGTGACCACTAGTGCTTGTCCTGCGAGGAATGCCATAATTTTGATGGATACAAGAGATGGGGATGGGATCGAAGTTATTGTGAGTATGGAAGAGAATGACATGGTTAGGTTTGAATGTGATGTGGAGCTCCTTCAATATGGCTCTTTAAATCCGAGTATTGTTTGA 1314 0.3638 MEMEIMSRDFIKPSTPTPPHLRNFPISFIDHITFRYYVPLLFFYNDTKLCDQQSKISHLKSSLSRTLSMYYPFAGRFKDQRSIECNDKGVPFLVANIIRIKLSTILENPNEKLLNLLFPDDLQWKMMEWNESILIFQINCFPCGGIVISVCACHKIIDTTTAFNFMNDWSKLNREQELESKSTSASLLPYNLLCAGDTIFSLGNLPNFPEVDFVIEKTIVRKRFVFEASKLKLLKNLVNFNSHVVENPTRVEVVTALIYKCMVSTLGLNFKTTSLQMAVNLRTRMNPPLSNKCVGNLVWILFVINPELHDLEFRIRQGLREFCEVYLKKLGGKEKDLSFICECLKQLTTTVSKSDNNQSLIAFASWCKFPMYEADFGWGKPTWVTTSACPARNAIILMDTRDGDGIEVIVSMEENDMVRFECDVELLQYGSLNPSIV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01258 437 Gene3D - 1 191 IPR023213 -
Vifa6g01258 437 PANTHER F21J9.9 4 429 - -
Vifa6g01258 437 Pfam Transferase family 2 426 - -
Vifa6g01258 437 Gene3D - 216 429 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01258 Vifa-Chr6 410409019 410410332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01258 1 421 Monolignol Biosynthesis Gene Families AT5G48930 24.622 8.41e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01258 - - gmx:100806928 494.582