Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01254 ATGGCGATTTTTGATATTCTCTTAGGAACAACCAATGTAGCATTCTTCTATGTTATTTTGATATGGGTTTTAATTGATAGTTTGAAACAAACCAAAAGTAACAACAATGTTTTACCTATAAAACACAAACCAACGGTTTTTGCTTATATCACTGTTCTTTTCAGTGTTGTTATTTCTATTTTGAACGTAGCTTTTGTTTTCTATGAGTACATTTACACCACTAATGGATTATTCATAGGATTTATTTTTGTTTCTTCAGCTTTAACATGGGTTTTAGCTACTTTGGTTTCGTGGTATTCCATGAAGAAAACACTAAGAGAGAGTAAAAGATTCCCTTTTGTTCTAATTCTTTGGTGGGTTTTTGCCACTGTTGTTGATACAGCTTCATTGTCATTGAACCTTGTTAAAAATTATGAATCTATCAACTTGAGGATTTTATTGTTGGAGGATAATATGATTGATGCGGTTTCTTTGCCTATGTTGTTAGTTCTGTGTTTCAATGCACTTTCAAATGTGTGTGTAAGGGAACAAAGTGAGATAGAACAAAGGTTACTTCAGAAAGAGTTTGAATCTTGTAATTTGGGGGATGAAGATGAAGGTGAAGAGGCTTTTATGAAAGCTAGTATATGGAGCAAACTTACATTTGGGTGGTTGAATCCTATTTTTGAAAAGGGTCGGATTCAAAAACTTGAACATGTTCATGTTCCTTCTGTTCCTCTCTCTGAAACTGCTGCTACTGCTTCTTCTATGTTGGAACAATCTATTAGGAAACAGAAACTTCAAGGCGGTTCTTTGACAAAAGCAATTTTCCTTTCTGTTTGGAAATCCTTAGCCTTAAATGCTGTTTTAGCAGGTGTTAATACTATTGCCTCTTATATTGGTCCATTATTGATATCGAACTTTGTGAATTTTCTGTTATCAAATAATGATAACTCAAGCACCAAATATGGAATGATTCTTGCCTTCATTTTCTTTCTCTCAAAAACTATTGAGTCACTTAGTCAAAGACAATGGTATTTTGGTGCTCAGAGAATTGGAATTCAGGTACGTGCAGCACTTATGGCATTAGTTTATAGCAAATCACTAATGATTAAATGTGGTGGACCAACACATGGTAAAGTCATCAACTTGATTAATGTGGATGTCGAAAGAATCGGCGACTTTTGTTGGTATGTTCATGGAGTTTGGCTTCTTCCAGTTCAGATTATTTTGGCTTTGGTGATCTTATACATAAATTTGGGTTACACACCTTCTATTGCTGCACTTTCTGTTACTATTTTGGTTATGGTTTGTAACACACCTTTAGCCAATATGCAAGAAGGTTTACACTCTAAGATAATGGAAGCAAAAGATTCAAGAATCAAAATGACTTCAGAGACTATGAAGAACATTCGAATTTTGAAGTTGCATTCGTGGGAATCTACATTTCTGCAGAAACTCTTCCAACTTAGGGATATAGAGAGGAATTGGTTACAGAAATATCTATACTTATGCTCAGCGGTAGCCACTCTATTTTGGGCGTCTCCGACTTTTGTTTCTGTTTTCACTTTTGGCGCTTGTATATTGGTGAAAACTGAACTAACTGCAGCCACGGTTCTCTCGGCTCTAGCGACGTTTCGTATTTTGCAAGAACCAATTTACAATTTGCCTGAACTTATTTCCATGATAACTCAAACAAAAGTTTCGGTTGATCGAATTCAGGAATTCATACAGGAAGAAGATCAAAATCAGTTCATGAATAAGCCGCATGCTTCCAAAACTTCAAGACTTGCAATTGAAGTAAAGCCGGGAGAATATGCATGGGAAGAAAATGACCAAATTCTCAAGAAATCGACAATTCATATTGCAGAAAGATTAACTATAAACAAAGGTCAAAAGGTAGCGGTTTGTGGACCGGTAGGGTCTGGAAAATCGAGCTTGCTTTGTAGTATGCTTGGCGAGATTTCATTGGTTTCTGGGTCAGCAACTAAAGTTTATGGGACTAGAAGCTATGTACCGCAAAGTCCATGGATTCAATCTGGAACTATAAGAGAGAATATTTTGTTTGGGAAGGAAATGAATAAGGACTTTTACGACAATGTTGTAGATGGTTGTGCATTGCTCCAGGATATTAACTTATGGAGTGATGGAGATTTGAACATGGTGGAGGAGAGGGGAATAAATTTAAGCGGAGGACAAAAACAGCGTGTTCAGTTGGCAAGGGCTGTTTACAATGACTCGGATGTTTATTTCCTCGATGATCCTTTTAGCGCGGTTGATGCTCATACCGGAAGTCATTTGTTTAAGGAATGTCTTATGAAACTTTTATACGATAAAACTGTTGTCTATGCTACACATCAACTAGAATTCTTGGAAGCTGCAGATCTTATTCTGGTTATGAAAGATGGAAAAATAGCGGAGTCTGGAAAGTATAGAGATCTCATCGCGTGTCCGAATAGCGAATTTGTCCAACAAATGGCTGCTCATGAAGAAACAGTAAGCCAAATTCCAAGCCAGAAAGATGATTTTGTTAACAGCAGACCTTGCCAAAAAAATCGAACTGAAATTGCAGAAGATAATATTCAAGAGATTATGATGGATTGGAAGAGAACGAGAGAAGAAGAAGCAATGACTGGTCGAATGGGAAGCAACTATTGGATGTCATGGGCTACAGAACAAAAGGGAAGAGTAGATAACGCGCAGCTTATGGGAATGTTTGCTCTTCTATCTGGTGGAAGCTCAATCTTCATATTGGGAAGGACTGTTTTAATGGCGAAAATCGCTGTGGAGACTGCTCAGCGCCTTTTTCATGGAATGATCACATCGGTTTTCAGAGCACCTGTTTCGTTTTTTGATACCACACCTTCTAGCCGAATACTGAGTAGGTCATCTACGGATCAAAGTACAGTAGATACCGACATACCCTACAGATTAGCGGGACTAGTCTTTGCACTTATCCAGTTATTGAGTATCATTGTCCTAATGTCCCAAGCCGCATGGCAAGTCATTCTTCTCTTTTTTGTGGTTCTTGCTATCTCCGTCTGGTATCAGGCCTATTACATCACTACGGCTAGGGAATTGGCCAGGATGGTGGGAATTCGAAAGGCGCCAATCTTGCATCACTTCTCAGAATCAATTTCCGGGGCTGCCACAATTCGTTGTTTCAATCAAGAGAAAATATTCTTGACCAAGTCTATGGCTCTAATCGACGATTATTCTCGGGTAGCCTTTCATAACTATGCCACCATGGAATGGTTGTCTGTCAGAATAAACTTTCTCTTTAATTTGGTCTTCTATTTTGTTCTCATTATCTTGGTTAATTTGCCAAGGTCTGCCATCAGTCCCAGCATGGCGGGTCTTGTAGCGACTTACGGTTTGAACTTAAATGTGCTACAAGCTTGGGTGATATGGAATCTATGCAATGTCGAGAACAAAATGATTTCTGTAGAGAGAATACTACAATTCTCTAATATACCGAGTGAAGCGCCATTAGTTATTCAAGATAATAGGCCTGAACCAGAGTGGCCTAAGGAAGGAAAAATTGAACTCCATAACCTTCATATACAATATGAACCTGCTGCTCCTATGGTTCTCAAAGGCGTCAATTGCGTCTTCCCTGGACAGAAGAAAATCGGAATAGTAGGTAGGACGGGAAGCGGAAAATCTACTCTGGTGCAAGCTCTATTTCGAGTAGTGGAACCTTTGGAAGGATGCATACTTATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGGTCTAAGCTTGGTATTATTCCTCAGGACCCGACCTTGTTCTTAGGTACCGTAAGGACTAACTTGGATCCCTTGGAACAACATACCGATCAAGAACTTTGGGAGGTTCTCAGAAAGTGCCATCTTGCTGAAATAGTACAGCAAGATCCAAGACTTCTTGATGCACCAGTCGCCGAGAACGGAGAAAATTGGAGTGTTGGACAAAGACAACTAGTTTGCCTTGCTAGGCTGTTACTGAAGAAAAGAAAAATCTTGGTCCTAGACGAGGCAACTGCGTCCATTGACACTGCAACGGATAATTTAATTCAGAAGACTATAAGAGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCACATAGAATTCCTACTGTCATTGACACTGATCTAGTTTTGGTCCTTAATGAAGGGACAATTGCGGAGTATGATAAACCATCTAAATTGCTACAAGACAGTTCTTCTTCGTTCTCGAAGTTGGTTTCGGAATTTTTGAGGAGATCATCACAAAGTAATTGA 4257 0.3869 MAIFDILLGTTNVAFFYVILIWVLIDSLKQTKSNNNVLPIKHKPTVFAYITVLFSVVISILNVAFVFYEYIYTTNGLFIGFIFVSSALTWVLATLVSWYSMKKTLRESKRFPFVLILWWVFATVVDTASLSLNLVKNYESINLRILLLEDNMIDAVSLPMLLVLCFNALSNVCVREQSEIEQRLLQKEFESCNLGDEDEGEEAFMKASIWSKLTFGWLNPIFEKGRIQKLEHVHVPSVPLSETAATASSMLEQSIRKQKLQGGSLTKAIFLSVWKSLALNAVLAGVNTIASYIGPLLISNFVNFLLSNNDNSSTKYGMILAFIFFLSKTIESLSQRQWYFGAQRIGIQVRAALMALVYSKSLMIKCGGPTHGKVINLINVDVERIGDFCWYVHGVWLLPVQIILALVILYINLGYTPSIAALSVTILVMVCNTPLANMQEGLHSKIMEAKDSRIKMTSETMKNIRILKLHSWESTFLQKLFQLRDIERNWLQKYLYLCSAVATLFWASPTFVSVFTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMITQTKVSVDRIQEFIQEEDQNQFMNKPHASKTSRLAIEVKPGEYAWEENDQILKKSTIHIAERLTINKGQKVAVCGPVGSGKSSLLCSMLGEISLVSGSATKVYGTRSYVPQSPWIQSGTIRENILFGKEMNKDFYDNVVDGCALLQDINLWSDGDLNMVEERGINLSGGQKQRVQLARAVYNDSDVYFLDDPFSAVDAHTGSHLFKECLMKLLYDKTVVYATHQLEFLEAADLILVMKDGKIAESGKYRDLIACPNSEFVQQMAAHEETVSQIPSQKDDFVNSRPCQKNRTEIAEDNIQEIMMDWKRTREEEAMTGRMGSNYWMSWATEQKGRVDNAQLMGMFALLSGGSSIFILGRTVLMAKIAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQAAWQVILLFFVVLAISVWYQAYYITTARELARMVGIRKAPILHHFSESISGAATIRCFNQEKIFLTKSMALIDDYSRVAFHNYATMEWLSVRINFLFNLVFYFVLIILVNLPRSAISPSMAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNIPSEAPLVIQDNRPEPEWPKEGKIELHNLHIQYEPAAPMVLKGVNCVFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLRKCHLAEIVQQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDTDLVLVLNEGTIAEYDKPSKLLQDSSSSFSKLVSEFLRRSSQSN 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01254 1418 CDD ABC_6TM_ABCC_D2 874 1149 IPR044726 GO:0140359
Vifa6g01254 1418 Pfam ABC transporter 619 749 IPR003439 GO:0005524
Vifa6g01254 1418 SMART AAA_5 623 797 IPR003593 GO:0016887
Vifa6g01254 1418 SMART AAA_5 1200 1385 IPR003593 GO:0016887
Vifa6g01254 1418 SUPERFAMILY ABC transporter transmembrane region 891 1154 IPR036640 GO:0005524|GO:0016020
Vifa6g01254 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 820 IPR003439 GO:0005524
Vifa6g01254 1418 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 878 1137 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01254 1418 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 278 558 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01254 1418 CDD ABCC_MRP_domain1 592 797 - -
Vifa6g01254 1418 Gene3D ABC transporter type 1, transmembrane domain 264 576 IPR036640 GO:0005524|GO:0016020
Vifa6g01254 1418 Gene3D ABC transporter type 1, transmembrane domain 872 1155 IPR036640 GO:0005524|GO:0016020
Vifa6g01254 1418 FunFam ABC transporter C family member 10 261 574 - -
Vifa6g01254 1418 Pfam ABC transporter transmembrane region 279 545 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01254 1418 Pfam ABC transporter transmembrane region 878 1100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa6g01254 1418 CDD ABCC_MRP_domain2 1172 1392 - -
Vifa6g01254 1418 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 205 1408 - -
Vifa6g01254 1418 SUPERFAMILY ABC transporter transmembrane region 270 573 IPR036640 GO:0005524|GO:0016020
Vifa6g01254 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 810 IPR027417 -
Vifa6g01254 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1164 1400 IPR027417 -
Vifa6g01254 1418 Gene3D - 615 850 IPR027417 -
Vifa6g01254 1418 FunFam ABC transporter C family member 3 1157 1409 - -
Vifa6g01254 1418 FunFam ABC transporter C family member 5 866 1155 - -
Vifa6g01254 1418 CDD ABC_6TM_ABCC_D1 279 566 IPR044746 GO:0140359
Vifa6g01254 1418 Gene3D - 1157 1410 IPR027417 -
Vifa6g01254 1418 FunFam Multidrug resistance-associated protein 4 577 836 - -
Vifa6g01254 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1174 1408 IPR003439 GO:0005524
Vifa6g01254 1418 Pfam ABC transporter 1191 1339 IPR003439 GO:0005524
Vifa6g01254 1418 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01254 Vifa-Chr6 409057928 409063218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01254 619 847 Calmodulin-binding Proteins AT2G36910 28.405 1.71e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01254 - - mtr:25501707 2405.94