Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01245 ATGGCTGCTGGTAGACATGGTCGTTATCACGAAAACGAGTTTAAGGATCATGAGTCCAATTTGGAAGTTAATAGGCGCGGGTTTTCGATTTCGAAAGAGTATGATCGGGTTAGGAATGGTGGTCATGATGATGTCAGGAGTGGGAGTAGAGATTCCAGAGATAAGATTAGGATGAGGCAGAAGGGTGTTAATGAGAGAGAAGCTGTTGTTAATGGAAGTTACCGGTCAGCTTCCAGCCGGAGTGACTCCGGCAGCAGTGGCAGCCTTGGCCCTCGTCCCTGTGGTTTTTCTGCAAAGGCAATTGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGCGGGTCTGATGGTGCTACTGAATCTGAGACTGGGGTGAAAGAATGTGAGGTTGCTGTGTTTGAAGGGAAGAGGTCACAGTCACCTCCTCCCCAGGAGAGGAAAAGGAAATTTTCACCCATTGTGTGGGATCGGGATGACAAGGAGGTTAAGGGTTCATCTAAAGTTAGGGTTTCCACTACAACCGTGATTGCTCTCCCTCCTCTGCCTCAGTTGTCAAAACCGTCTGTTCTGTCTCCGAATGCTTCTTCTGGTGAAGTTCAAATACGTTCTGTTGGGAACAGAGAGACTGGGGATCTTGAATTGCCCGCAGAAGCTCAGGTTACTGTTCCTTCTCCTTCCAGATTGCAATCCTTGTCACCAAAAGAGACTTTGGGTAATGATCAGGAAGCTGAACAACCAGAAGGTGAAGATTATGTTTCAACTCGTAATATATCATCTTCTAGATGGGCAGCAGGAGATAACTCTCCTGTTGACGAGGGTGAAATTCTCTATGATGAGGAAATGCCTAAAAGGAAGAGGAGGCTAACTCCTGAGTTGTTGGAGACTAGAGTGAGGAATAAGTTATTGAGCCCCAGTGATTCTAAAATAGGTAGTTTTGAAGGAGCTAGAGCCAAATCATCTGATTCGGAAGAAAGAAGTGTTATTCATGGGAGAACGTCTAGTGGCGATGGACATCCTGGTATTGAATCAGAAAAGGATGACTATATGGACATTGATGTTCGAGGTACGAAAAGTGACGCCAGTATTAGTCACTCCGGTACAGAATCTGAAGATGACGATGATAGGCAGGAGACTCCAGAACCTCCAGCTCAACCTCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGCGTGGATGAGTTTGAGAGACTTAACAAGATCGATGAAGGAACATATGGTGTTGTATATAGAGCTAAAGATAAGAAGACGGGGGAAGTTGTAGCATTAAAGAAGGTCAAAATGGAGAAGGAAAAAGAAGGTTTCCCACTGACTTCTCTTAGAGAAATAAACGTTCTTCTCTCTTTTCACCACCCATACATAGTTGATGTCAAGGAAGTAGTGGTTGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGACCTCAAAGGATTAATGGAGTCAATGAAGCAGCCGTTTAGCCAAAGTGAAGTGAAGTGCTTAATGATCCAACTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTACTTCATAGGGATTTGAAGACTTCAAATCTTCTTCTAAATAACAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAATATGGGAGTCCTTTGAAACCATATACTCACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTTGGGGCAAGACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCCGAACTATTGTCTAAGGAACCACTGTTCAATGGAAAAACAGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAGCAATTTGGCCAGGCTTCTCAAAATTGCCCGGAGTCAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACGTCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGAGGATCACGGCTGAAGCCGCTCTCAATCATGAATGGTTTCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCCGCTCAACATGCTCAGGACAGGCGGATGCGTAGAATGTACAAGAGTCCAGATCCTTTAGAGGAGCAGCGACGGAAGGAGTTGCAGCAGGGTGGCTTGGGCACTGGTGGAGTTTTTGGTTAA 2241 0.4418 MAAGRHGRYHENEFKDHESNLEVNRRGFSISKEYDRVRNGGHDDVRSGSRDSRDKIRMRQKGVNEREAVVNGSYRSASSRSDSGSSGSLGPRPCGFSAKAIDREPGELSSESGSDGATESETGVKECEVAVFEGKRSQSPPPQERKRKFSPIVWDRDDKEVKGSSKVRVSTTTVIALPPLPQLSKPSVLSPNASSGEVQIRSVGNRETGDLELPAEAQVTVPSPSRLQSLSPKETLGNDQEAEQPEGEDYVSTRNISSSRWAAGDNSPVDEGEILYDEEMPKRKRRLTPELLETRVRNKLLSPSDSKIGSFEGARAKSSDSEERSVIHGRTSSGDGHPGIESEKDDYMDIDVRGTKSDASISHSGTESEDDDDRQETPEPPAQPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEVVALKKVKMEKEKEGFPLTSLREINVLLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNEAIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRMYKSPDPLEEQRRKELQQGGLGTGGVFG 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01245 746 SUPERFAMILY Protein kinase-like (PK-like) 392 697 IPR011009 -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 722 746 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 275 293 - -
Vifa6g01245 746 SMART serkin_6 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01245 746 MobiDBLite consensus disorder prediction 316 330 - -
Vifa6g01245 746 Gene3D Phosphorylase Kinase; domain 1 384 482 - -
Vifa6g01245 746 CDD STKc_CDC2L1 394 691 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vifa6g01245 746 PANTHER CELL DIVISION PROTEIN KINASE 398 697 - -
Vifa6g01245 746 Gene3D Transferase(Phosphotransferase) domain 1 483 724 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 186 202 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 1 64 - -
Vifa6g01245 746 FunFam cyclin-dependent kinase G-2 isoform X1 385 482 - -
Vifa6g01245 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Vifa6g01245 746 ProSiteProfiles Protein kinase domain profile. 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01245 746 MobiDBLite consensus disorder prediction 250 264 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 1 386 - -
Vifa6g01245 746 FunFam Cyclin-dependent kinase G-2 483 722 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 337 353 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 221 238 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 71 90 - -
Vifa6g01245 746 MobiDBLite consensus disorder prediction 139 165 - -
Vifa6g01245 746 Pfam Protein kinase domain 400 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01245 Vifa-Chr6 407056304 407059585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01245 391 738 Core Cell Cycle Gene Families AT5G10270 44.000 2.81e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vifa6g01245 Pkinase 7.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01245 K08818 - gmx:100792524 1165.98