Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01239 ATGATGGATGCTGCTGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGACGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAGTATATTGCAAAGTATTATCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGCAGTAAACTTTACCTGGCTGTAACTGGGGACTCTGTTCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGGCGGGTGGAAGATATTGTTCCACAATCCATTGGATATCAGGTTCAGGAGATTGTGAATGAATTTGCAAGCGTGGATTTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATCTAATTGCATTGCTCCAGCAAGGCAAGAAGTTTGACGACGATGGTGAAAGTTATGAGCTCGAGTCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAAGGCTCGGGCCGAGGAAGACAAACGGAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGGAATGAGTTTTCAGACGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTAATGAGGATGGTGTTCCTGTTTGTAATGGTCAGGTTTTTGGCAGACAGCTTTCAAAACTTAGTTCCTTTAGTTTCACGCCAAATAATAATACGGAGCCGGGGCAGATGGCTCTACCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGACCCAGTTATTATTGCTTCGGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAAACCCAACAGAATCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCCGAAGGCCCTCCTGAGTCTCTTGATCTTAACTACTGGAGATTGGTAATATCAGAGTCTGAGTCTGCAAATTCAAGATCTGTAAATAGTGTCAGCTCTTGCAAGCTGAAGGGTGTCAAAGTGATTCCTTTAGAAGAGAGTTGTATCTCAAAGGAATATGGGGAAAATGAAGTTGAAAGTGTATCAGTGCAAGAGGAAGACTCTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGAGGACAATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTGAGGCTGTTGCTGAGGGATGATGAAGAAGCTAGGATTCTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTTTACATGAAAGGAATTTGATGGCTCAAGAAAGCGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAATGACAGGAATAAGGAGATTATGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCTTGCCTTGAAGAAGCCAAACCTATGATTGGCATGAGCCAGGCTGTACGGTTTCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCATGATTCTCTCCACGCACTCTATAATCTTTCTACTTTGCCCTCCAATATTCCATGCTTACTTTCATCTGGCGTTGTTAATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCTATTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGGCTCATTAGTGCATTGGCTTCGATATTGGACACTGATGAGCTTGAAGTGCAGGAGCAAGCTGTCTCTTGCCTCCTAATTTTGTGCAATAGAAGTGAGCAGTGTTCTGATATGGTTCTGCAAGAAGGAGTTATACCTGCGTTGGTATCAATATCAGTGAATGGGACCCCAAGAGGACAAGAAAAAGCTCAGAAACTCCTGATGCTGTTCCGACAGCAGCGACGAGATGAATCACCTGTTGAGGCTCATGAGTGTCCTCCTGAAACTAGTGATATGTCTGTGCCACCTGCTGAAATGAAACCTTTATGTAAGTCGATGACTAGAAGAAAGACTGGGAAAGGTTTTGGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2304 0.421 MMDAAAEVEENLFAVSDAKLHGQMCKALSIVYCKVLSVFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGYQVQEIVNEFASVDFALDPLEKQVGDDLIALLQQGKKFDDDGESYELESFHQAATRLGITSSRAALAERRALKKLIDKARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDNDSQGSGPCSPTVQGSNEDGVPVCNGQVFGRQLSKLSSFSFTPNNNTEPGQMALPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVISESESANSRSVNSVSSCKLKGVKVIPLEESCISKEYGENEVESVSVQEEDSEQYLSFLKVLTEEDNWKRKYEVVEQLRLLLRDDEEARILMGANGFVEALVQFLQSALHERNLMAQESGAMALFNLAVNNDRNKEIMLSAGVLSLLEEMISNTSSYGCATALYLNLSCLEEAKPMIGMSQAVRFLTQLLQSDYDIQYKHDSLHALYNLSTLPSNIPCLLSSGVVNGLQSLLVDQGDDCTWTEKCIAILINLATSQVGREEMVSTPGLISALASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFRQQRRDESPVEAHECPPETSDMSVPPAEMKPLCKSMTRRKTGKGFGFFWRSKSYSVYQC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01239 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Vifa6g01239 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vifa6g01239 767 SUPERFAMILY RING/U-box 278 357 - -
Vifa6g01239 767 MobiDBLite consensus disorder prediction 715 735 - -
Vifa6g01239 767 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Vifa6g01239 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Vifa6g01239 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Vifa6g01239 767 CDD RING-Ubox_PUB 283 335 IPR045210 -
Vifa6g01239 767 Gene3D - 420 547 IPR011989 -
Vifa6g01239 767 SMART arm_5 457 501 IPR000225 GO:0005515
Vifa6g01239 767 SMART arm_5 542 583 IPR000225 GO:0005515
Vifa6g01239 767 SMART arm_5 502 541 IPR000225 GO:0005515
Vifa6g01239 767 SMART arm_5 626 668 IPR000225 GO:0005515
Vifa6g01239 767 Gene3D - 548 708 IPR011989 -
Vifa6g01239 767 SUPERFAMILY ARM repeat 429 710 IPR016024 -
Vifa6g01239 767 PANTHER U BOX DOMAIN-CONTAINING 23 712 - -
Vifa6g01239 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Vifa6g01239 767 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01239 Vifa-Chr6 405500553 405504547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01239 2 766 U-box Gene Family AT1G24330 65.385 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01239 - - gmx:100814944 1232.24