Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01232 ATGGTTAAGTACTCGAGAGAGCCCGATAATGCCACCAAGTCCACCAAGGCACGAGGTGCAGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGTTTTCCATCAGGAAGATGCCCTTGATCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAAGCCATTCCATTTAGACGTTTCTGCCGTGGTGTCGGGAGGACAGCCCAGGCTAAGAACAGACACTCCAACGGACAAGGAAGGTGGCCAGCCAAATCTGCTAAGTTCATCCTTGATTTGTTGAAGAATGCAGAGAGTAACGCTGAAGTGAAAGGTTTGGATGTTGATGCTCTATATATTTCTCACATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGGGCACACGGAAGAATCAACCCTTACATGTCATCCCCATGCCATATAGAATTGATCTTATCTGAAAAGGAAGAAGCTGTTAAGAAAGAGCCTGAGACCCAGTTGGCTTCTAGCAAGAAGAGGGCTTAA 522 0.4598 MVKYSREPDNATKSTKARGADLRVHFKNTRETAFSIRKMPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLASSKKRA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01232 173 FunFam 60S ribosomal protein L17 1 173 - -
Vifa6g01232 173 PANTHER 60S RIBOSOMAL PROTEIN L17 1 171 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa6g01232 173 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa6g01232 173 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa6g01232 173 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vifa6g01232 173 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vifa6g01232 173 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vifa6g01232 173 Gene3D Ribosomal protein L22/L17 1 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vifa6g01232 173 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01232 Vifa-Chr6 403342921 403346883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01232 1 173 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.439 5.97e-116 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01232 K02880 - gmx:100499784 329.717