Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01226 ATGTCTAAAGAAGATCCAATAGAAAGTTCTAATGTTCCAGACCTTACTTCTGTATCTGTTGAACCACTGCTCACTCTAAAACTCGGTAAACGGATGTACTTTGAGGATTTATGCCTAGAAACTGATCCCAAAAACTTTGGGGATTCCATGTCGAGTTTAAGTATTGGAAAGAAATGCAAGTCCGATAGCCGGAACTTACAATGTTCGCGCTGTCAAGTTGAAGGTTGTGGCCTTGACCTTTCATCGGTGAAAGATTATTATCGCAAACATAGAGTTTGTGAAACTCATTCCAAATCTCCTAAAGTGGTTATAGCTGGTTTGGAACGACGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTTTTTGAGTTTGATGAAAAAAGAAGAAGCTGTAGACGACGTCTTTCACATCATAATGCAAAGCGGCGTAAACCTCGTCCTTCTGATGTTGTCCAATCAAGCCAATCAGCTTTGTCTTCTTCGCGATGTGATGGAGAGCAACAGATGAGTCCATTTTCGTATTCAAAGACTGCTACAAATTTAGCCTTGCAAAACATAGATAACAACTTGCTCCTCCAAACCAAAGATTTTCTCTTGAAGCCTGCAAAAGATAACATTGACGCACCAAGTACTGTCACTATGCTTTCTCACGATTCTAATGTCAATTTTACATCCAAAGTCATTGCAACCAAGAGTATCATCAATCCAGGTGTAGAAGATTTCATTACCTTTTCTGATACAAATGCAACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCGTATGCGACTGAATCTATTTCTCTAGAACATTCTAATCGCACAAGCAGTTGTGGTCAAGCCATAACACATGCAATGAGTCAGGGCACGGCGCTTGCTTCATCAGAATATATTAGTGAGCATGATCAACATGTCAATTCCAGCATGTGGATATCAAACTCAAACTGTGAAGAAAGCAATCACTTTCAAGAATTTCAACTGTTGAGAGAACCTTATGAATCTGGTTTTCACCAGTTGGACTAA 1041 0.3996 MSKEDPIESSNVPDLTSVSVEPLLTLKLGKRMYFEDLCLETDPKNFGDSMSSLSIGKKCKSDSRNLQCSRCQVEGCGLDLSSVKDYYRKHRVCETHSKSPKVVIAGLERRFCQQCSRFHALFEFDEKRRSCRRRLSHHNAKRRKPRPSDVVQSSQSALSSSRCDGEQQMSPFSYSKTATNLALQNIDNNLLLQTKDFLLKPAKDNIDAPSTVTMLSHDSNVNFTSKVIATKSIINPGVEDFITFSDTNATQDFTCALSLLSTNPWDSYATESISLEHSNRTSSCGQAITHAMSQGTALASSEYISEHDQHVNSSMWISNSNCEESNHFQEFQLLREPYESGFHQLD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01226 346 MobiDBLite consensus disorder prediction 134 169 - -
Vifa6g01226 346 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Vifa6g01226 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 279 IPR044817 GO:0003677
Vifa6g01226 346 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
Vifa6g01226 346 Gene3D - 62 132 IPR036893 GO:0003677|GO:0005634
Vifa6g01226 346 Pfam SBP domain 71 144 IPR004333 GO:0003677
Vifa6g01226 346 SUPERFAMILY SBT domain 70 149 IPR036893 GO:0003677|GO:0005634
Vifa6g01226 346 MobiDBLite consensus disorder prediction 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01226 Vifa-Chr6 396340443 396342190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01226 7 148 SBP-box Gene Family AT5G43270 60.274 2.86e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa6g01226 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01226 - - mtr:25501754 388.267