Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01225 ATGTGGCTGAAATGGTGGGAGAAGATTTCAGGGAATAGTTACAAAATCAATAGACAGTATTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGATGTGGAGGAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTTTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCAAGTATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATTTCAACTTTTCATCATGCCAAGAGCCCCTCAGCCATTGATCAGAGGACTTTTGCTAGCTACACAGAAAGAACAGCATTTGAGAGGCCTCTAACAAGTGGTGTTGCTTATGCGGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATCAAGAGAATGGATACTCTGGAGCAGAATCCAGTTCATAAGGATGATTATGATACTGAGGCGTTAGAGCCATCTCCTATTCAGGAAGAGTATGCTCCTGTCATATTTGCGCAAGATACAATTTCACATGTCATATCTGTTGACATGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTGCGCGCAAGAGAATCGGGCAAAGGGGTTTTGACTGCACCCTTCAGGCTTCTCAAATCGAATCGTCTAGGTGTTATTCTAACATTTGCTGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGTTATATCGGCGGGGTATTTGATGTCGAATCATTAGTTGAGAAATTACTTGAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTGTATGACACTACAAATCATACACATCCAATTGCCATGTATGGCTCAAATGTATCCGGGGATGTGTTCAATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGAAAACATGAGATGCATTGCAGGTTCAAACAGAAACCACCATGGCCGTGGGTTGCAATAACTACTTCAATTGGAATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCCATGTCACCGTGAATCGAATTGCCACAGTAGAAGAGGATTGCCGAGAGATGATGGAGCTTACAAAACGCGCAGAAGCAGCCGATGTAGCAAAATCTCAGTTTCTTGCCACTGTCTCTCATGAAATCAGAACACCGATGAATGGTGTTTTAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTAAGAACAGCACAGGAAAGTGGAAAAGCTCTGGTGTCTCTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTCGGTAAGCTTGAGCTCGAGGCAGTGCTTTTTGACATACGCTCGATTTTGGACGACGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTTGAGTTGGCAGCTTATGTCTCAGATCATGTTCCTAAACTACTAATAGGCGACCCGGGAAGGTTTCGTCAAATCATTACTAATCTAATGGGAAACTCAATTAAGTTCACGGACAAAGGACATATTTTTGTGACCATTCATCTTGTTGAAGAGATTGTTCATTCAATAGAGGTTGACAATGAATCAAATCCAGAAAGCACTTTGAGCGATTTCCCCGTTGCGAATAGTTGCTTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGAGGGACCACTTGGTTCTTTCTCTTCCACCTCTACTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGATGGTATTCCTAGAGAATCCCAACCCCTCATCTTCACTCCATTCATGCAAGCCGGTTCGTCCATCTCCCGAAAACACGGAGGAACTGGCATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGCAAGTGAACCAAAAACTGGTTCCACATTCACTTTTACCGCGGTGTTCACCAACGGACTCCTCAATTCTAACGACAGTAAAATACCGCAAATCAATAACCAATCTCAACCTGCATGTTCAGAATTCGAGGGTATGAACGCGTTGGTCATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCGATATCACATCCAAAGGCTTGGCATTCACGTTGAAACGGTTTCTGATTTGAACCAATGTTTGTCAACAATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGATCAAGAAGTTTGGTATAGAGATTCAAGCATGTCATCTCATTTTTTCAGTAGCACAAGGAAACTCGATCTCGGTTCTCCTCCGAAGCTATTCATTCTTGTTAACTCTAGTAGTAGTACCTCTTCTAAAACCAGCAGTGTAACCTCAGATGTTGATAATCCTACTATCATTACAAAGCCTCTTAGAGCAAGCATGCTCGCTGCGTCACTACAGCGAGCGATGAATGTCAGGGACAAGAGAACTCTAAATAGGGACCTTCACAATTTGTCTCTTAGCCATCTTCTTCTTGGGAGGAAAATTCTAATTGTTGATGACAATGGCGTGAACCGCGCAGTAGCAGCCGGTGCTTTGAAAAAGTATGGAGCAGAAGTGGTTTGTGTTAGCAGTGGAAAAGACGCCATCTCTTCGCTGAAACCACCCCATCAGTTCGATGCTTGTTTCATGGATATCCAAATGCCAGAAATGGACGGTTTTGAAGCTACTAAGAGAATCAGAGAGATGGAACATAATGAGAACAGGGAAGTATCTGTAAAGTGGCATGTGCCGATTTTAGCAATGACTGCAGATGTGATTCAAGCTACACATGAGGAATGCTTAAGGTGTGGAATGGATGGATATGTTTCAAAACCATTCGAAGCTGAACAGCTTTATAGAGAAGTCTGTCGGTTTTTTCCGTCATCTTAA 2919 0.4132 MWLKWWEKISGNSYKINRQYYQYIGSKRVKREMWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKDDYDTEALEPSPIQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYIGGVFDVESLVEKLLEQLASKQSVIVNVYDTTNHTHPIAMYGSNVSGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHVTVNRIATVEEDCREMMELTKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDHVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPESTLSDFPVANSCLSWKGFKAFSQEGPLGSFSSTSTDLINLIVSVEDTGDGIPRESQPLIFTPFMQAGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFTNGLLNSNDSKIPQINNQSQPACSEFEGMNALVIDPRPIRAKVSRYHIQRLGIHVETVSDLNQCLSTINKGNAVINMVLIDQEVWYRDSSMSSHFFSSTRKLDLGSPPKLFILVNSSSSTSSKTSSVTSDVDNPTIITKPLRASMLAASLQRAMNVRDKRTLNRDLHNLSLSHLLLGRKILIVDDNGVNRAVAAGALKKYGAEVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEHNENREVSVKWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVCRFFPSS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01225 972 Gene3D CHASE domain 109 338 IPR042240 -
Vifa6g01225 972 ProSiteProfiles Response regulatory domain profile. 844 969 IPR001789 GO:0000160
Vifa6g01225 972 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 665 IPR003594 -
Vifa6g01225 972 Gene3D - 56 108 - -
Vifa6g01225 972 Gene3D - 456 667 IPR036890 -
Vifa6g01225 972 SMART HisKA_10 392 457 IPR003661 GO:0000155|GO:0007165
Vifa6g01225 972 SUPERFAMILY CheY-like 842 968 IPR011006 -
Vifa6g01225 972 PANTHER TWO-COMPONENT HISTIDINE KINASE 70 962 - -
Vifa6g01225 972 Gene3D - 840 971 - -
Vifa6g01225 972 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 662 IPR036890 -
Vifa6g01225 972 SMART CHASE_2 105 306 IPR006189 -
Vifa6g01225 972 Pfam His Kinase A (phospho-acceptor) domain 392 455 IPR003661 GO:0000155|GO:0007165
Vifa6g01225 972 CDD REC_hyHK_CKI1_RcsC-like 845 965 - -
Vifa6g01225 972 CDD HATPase_EvgS-ArcB-TorS-like 509 665 - -
Vifa6g01225 972 ProSiteProfiles Response regulatory domain profile. 695 819 IPR001789 GO:0000160
Vifa6g01225 972 CDD PRTases_typeI 797 872 IPR000836 -
Vifa6g01225 972 FunFam Histidine kinase 4 364 455 - -
Vifa6g01225 972 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 378 458 IPR036097 GO:0000155|GO:0007165
Vifa6g01225 972 PRINTS Bacterial sensor protein C-terminal signature 610 620 IPR004358 GO:0016310|GO:0016772
Vifa6g01225 972 PRINTS Bacterial sensor protein C-terminal signature 651 664 IPR004358 GO:0016310|GO:0016772
Vifa6g01225 972 PRINTS Bacterial sensor protein C-terminal signature 627 645 IPR004358 GO:0016310|GO:0016772
Vifa6g01225 972 PRINTS Bacterial sensor protein C-terminal signature 592 606 IPR004358 GO:0016310|GO:0016772
Vifa6g01225 972 Pfam Response regulator receiver domain 845 963 IPR001789 GO:0000160
Vifa6g01225 972 ProSiteProfiles CHASE domain profile. 105 331 IPR006189 -
Vifa6g01225 972 SMART HKATPase_4 504 667 IPR003594 -
Vifa6g01225 972 FunFam Histidine kinase 4 109 338 - -
Vifa6g01225 972 Gene3D - 361 455 - -
Vifa6g01225 972 CDD HisKA 392 453 IPR003661 GO:0000155|GO:0007165
Vifa6g01225 972 Pfam CHASE domain 108 304 IPR006189 -
Vifa6g01225 972 SMART REC_2 843 965 IPR001789 GO:0000160
Vifa6g01225 972 Gene3D - 691 828 - -
Vifa6g01225 972 SUPERFAMILY CheY-like 690 821 IPR011006 -
Vifa6g01225 972 ProSiteProfiles Histidine kinase domain profile. 399 667 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01225 Vifa-Chr6 393291274 393295180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01225 1 971 Miscellaneous Gene Families AT1G27320 68.801 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa6g01225 CHASE 1.3e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01225 K14489 - gmx:100801546 1612.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01225 6 393291274 393295180 Vifa6g01225 6 393291274 393295180 ECH