Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01222 ATGAGTGAAAGTAAGGTAGTTGAAGCAAAAACTCAAAAAAACCTTCAAGATTTCGATCCTAAGAAGAAACCTAAGCGAAACAAATATGCTTTTGCTTGTGCTATGTTAGCTTCCATGACTTCCATTTTACTTGGATACGATATTGGTGTTATGAGTGGAGCAGCAATCTACATACAAAGAGATCTTAAAGTCTCGGACACTCAAATTGAGGTTATGATGGGAATCATTAACATCTACTCTCTCATAGGTTCTTGTCTTGCCGGCAGAACCTCCGATTGGATCGGTCGCCGTTACACCATTGTTTTTGCCGGTGCTATCTTCTTCGTCGGAGCCTTACTCATGGGTTTCTCACCAAACTACGCTTTCCTCATGTTCGGCCGTTTCATTGCCGGAATCGGTATTGGCTACGCCCTCATGATTGCCCCGGTTTACACCGCTGAAGTCTCCCCCGCTTCCTCTCGCGGTTTCCTCACTTCTTTTCCGGAGGTTTTCATAAACAGTGGAATATTACTTGGATACGTATCAAACTATGCATTTTCAAAACTCCCACTTAAAATTGGTTGGAGAATGATGCTTGGAGTAGGGGCAATTCCTTCAGTAATCCTGGCCGTCGGAGTGTTAGCCATGCCAGAGTCACCGCGATGGCTTGTAATGCGAGGTCGTTTAGGAGACGCTATAAAAGTCCTCAACAAAACATCAGACTCCAAAGAAGAGGCCCAGCTCAGATTAGCCGAGATAAAACAAGCCGCCGGAATACCGGAAGATTGCAACGACGACGTTGTTGAGGTAAAAAACAAAAACACCGGTGAGGGTGTATGGAAAGAGCTTTTCATTTATCCTACACCCGCAGTTCGTCATATTGTTATAGCTGCATTAGGGATTCATTTCTTCCAACAAGCATCAGGTATAGACGCGGTTGTTTTGTATAGTCCTAAAATCTTCGACAAAGCTGGGATCAAAGACAAATTCGGTCGTCGTCCGATGTTGTTAACAAGTGTCGGAGGTATGGTGGTCTCGCTTCTCACACTCGCTGTCAGCCTTACGATTATTGATCATTCAAAAACGAAACTAATCTGGGCCATTGGATTGAGTATAGCGACTGTTTTGTCTTATGTTGCGACGTTTTCGATTGGTGCGGGACCCATCACGTGGGTGTATAGTTCTGAGATTTTTCCTTTGAGATTGAGGGCACAAGGTGCTGCTGTGGGTGTTGTGGTGAATAGGGTTACAAGTGGGGTTATTTCAATGACGTTTTTGTCCTTGCAAAAAGCGATTACTATTGGTGGAGCTTTTTTTCTGTTTGGAGGTATTGCTACAATTGCGTGGATATTCTTTTATATTATGCTTCCCGAAACACAGGGGAAAACACTTGAAGAAATGGGAGAGTCTTTTGGGAAAATTTGGGCGAAACCGAAGAACGGTAAAGGAGTTGATAATGATCGTGTATCGCAAGTTCAGTTAGGGACTAATGTTTCAACTTAA 1482 0.4352 MSESKVVEAKTQKNLQDFDPKKKPKRNKYAFACAMLASMTSILLGYDIGVMSGAAIYIQRDLKVSDTQIEVMMGIINIYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFSPNYAFLMFGRFIAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINSGILLGYVSNYAFSKLPLKIGWRMMLGVGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNKTSDSKEEAQLRLAEIKQAAGIPEDCNDDVVEVKNKNTGEGVWKELFIYPTPAVRHIVIAALGIHFFQQASGIDAVVLYSPKIFDKAGIKDKFGRRPMLLTSVGGMVVSLLTLAVSLTIIDHSKTKLIWAIGLSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGAAVGVVVNRVTSGVISMTFLSLQKAITIGGAFFLFGGIATIAWIFFYIMLPETQGKTLEEMGESFGKIWAKPKNGKGVDNDRVSQVQLGTNVST 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01222 493 Pfam Sugar (and other) transporter 34 321 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 CDD MFS_PLT 36 460 IPR044776 GO:0005351
Vifa6g01222 493 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 SUPERFAMILY MFS general substrate transporter 19 460 IPR036259 -
Vifa6g01222 493 ProSiteProfiles Major facilitator superfamily (MFS) profile. 33 453 IPR020846 GO:0022857
Vifa6g01222 493 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 27 321 IPR045262 GO:0015144
Vifa6g01222 493 Gene3D MFS general substrate transporter like domains 23 466 IPR036259 -
Vifa6g01222 493 PRINTS Sugar transporter signature 124 143 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 PRINTS Sugar transporter signature 388 400 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 PRINTS Sugar transporter signature 365 386 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 PRINTS Sugar transporter signature 41 51 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa6g01222 493 Coils Coil 229 249 - -
Vifa6g01222 493 ProSitePatterns Sugar transport proteins signature 1. 87 104 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01222 Vifa-Chr6 392070629 392072557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01222 20 490 Organic Solute Cotransporters AT3G18830 70.356 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01222 - - lja:Lj3g3v3338420.1 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01222 6 392070629 392072557 Vifa1g00826 1 140639769 140641868 PCT