Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01217 ATGGCTTCATCAAGTGGAACATCATCAGGTTCAGGTTCAGGTTCAGGTTCATCTCTGCTACAAAATTCGGGTTCGGAAGAAGATTTACAGGCTTTGATGGATCAGAGAAAGAGGAAGAGGATGATATCGAATCGCGAATCGGCGAGACGGTCTCGGATGAGGAAACAGAAACACCTGGATGATCTTGTTTCTCAAGTGACAAAACTGCGGAAAGAGAATCAAGAAATACTCACAAGTGTTAATATCACCACTCAACAATATTTGAGTGTTGAGGCTGAGAATTCGGTTTTGAGAGCTCAGATTGGTGAACTGAGCAACAGGTTAGAATCCTTGAATGAGATTGTTGGTGCTATGAATTCAACCAATGCTGCTTTTCTTGAGCCTAACAATAGCTTTTTCTTCTTCAACCCTTTGAGTAATATGTCATATATGAATCAGCCTATTATGCCTTCTTCACACATATTACAGTACTGA 474 0.4051 MASSSGTSSGSGSGSGSSLLQNSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVTKLRKENQEILTSVNITTQQYLSVEAENSVLRAQIGELSNRLESLNEIVGAMNSTNAAFLEPNNSFFFFNPLSNMSYMNQPIMPSSHILQY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01217 157 SUPERFAMILY Leucine zipper domain 36 88 IPR046347 GO:0003700|GO:0006355
Vifa6g01217 157 MobiDBLite consensus disorder prediction 30 59 - -
Vifa6g01217 157 MobiDBLite consensus disorder prediction 1 59 - -
Vifa6g01217 157 MobiDBLite consensus disorder prediction 1 29 - -
Vifa6g01217 157 CDD bZIP_plant_GBF1 37 87 IPR045314 GO:0003700|GO:0006355
Vifa6g01217 157 FunFam BZIP transcription factor 34 86 - -
Vifa6g01217 157 Coils Coil 94 114 - -
Vifa6g01217 157 PANTHER BZIP TRANSCRIPTION FACTOR 44 6 151 - -
Vifa6g01217 157 Pfam bZIP transcription factor 36 78 IPR004827 GO:0003700|GO:0006355
Vifa6g01217 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 39 54 IPR004827 GO:0003700|GO:0006355
Vifa6g01217 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 34 97 IPR004827 GO:0003700|GO:0006355
Vifa6g01217 157 Gene3D - 34 89 - -
Vifa6g01217 157 SMART brlzneu 32 96 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01217 Vifa-Chr6 390087012 390087485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01217 30 157 bZIP Transcription Factor Family AT4G34590 58.451 1.06e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g01217 bZIP_1 7.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01217 K25786 - gmx:100101862 213.386