Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01209 ATGACTATCAAAATCCCATTACCTTCCATCCAAACGGTGGTTTCCACCGCCACTTCACTAGCCGCCACCGCCATGTTCTTCCATTCCCTCCTCCACAACTACCTCCCAGACGAGCTCTACTACTACTTCCGCTTCAAGCTTTCTCAACTCACAACCTCACTCTCTAACGAATTCACCACGGTGATCGACGAATACGAAACCCTAACCTACAACAAACTCTTCCAATCCGCTGAGCTTTTCCTACATCCTGACATCGCTCAACACCCTAAGCGATTCAAAACTGTAATGCGGCCTAACGAGCAGAATATCTCCCTCGTAATTGATCGCAACGAGGAAATCATCCACAGGTTCAAACGCGTTGATTTCAAGTGGAGATTAATCATACAAGCGATTCCGCCAACGTACATTAAAAGACATGGAGCAAGTTACGAACATCACACCATGGTGAAATCAAGTATTCGTCGCTTTGAGGTAAGGTTTCACAAGAAACACAGAAACATGGCTTTATCTGAGTATTTTCCGTTTGTTATGAAAAGAGCGAAAGAAATTCAAGGGGAACGGAAGACTCTGGAGCTTTTCACTCTCACGAACGATAGAGTGTTGAAAAGATTCGGAAATATGTGGCAATCTGTGGCTCTGGATCATCCTGCTACATTTGAGACATTAGCGATGGATAATGATTTGAGGAATATGATACTTGATGATTTGGATCTGTTTCTGGAGCGTAAAGAGTTCTATAAGAGTGTTGGTAAACCTTGGAAAAGAGGCTATTTGTTGTATGGTCCACCAGGGTGTGGAAAATCAAGTTTGATTGCTGCTATGGCTAGTTACATCAACTTTGATGTTTATGATTTGGAATTAGGTGATGTTTTGCGTAATACCGAGCTTAGGAGTTTGTTGATGTCAACACAGAATCGTTCTATACTTGTTGTTGAGGATATTGATTGTACCGTTGAGCTTCATAATCGTCTTGCATTTACAGTCCATCCTTGGCTTGCTGATAAGCCTCGGGTGACTTTATCAGGATTCCTCAATCTCATTGATGGTTTATGGTCTAGCTGTGGGGAAGAGAGGATCATAGTGTTCACTACCAATCACATAGACAAATTGGACCCAGCTCTGCTTAGACCAGGGCGCATGGATGTACACATTTCTTTGTCTTACTGCAGCCCGTGTGTGTTCAGAGAGCTGGCTTTGAATTACCTTGAGATGAGAGAGCACCCACTTTTTGCTGAGGTTGACAAGTTGCTGGAGAAGGCGAAGATCACTCCTGCAGAGGTGGGTGAGCATTTTTTACAGAATGAAGACCCTGAAATTGCAATAAGAAGCCTGGTTGAGCTCCTTGAAAAGATGGGACAAAATAATTGTGAATATAAAGCTATCAAAGAAGATGTCACCACTGATTCATTTAAAGCCTGCAATGGTTTTGAAACTGAAGATGGTAAGATAATCATTCTTAAGTTCCTTCATACTGATGAGGGTGCTTTGGTCGGGGAGCCTTCTCACGTGGAGCCTGTTCTCGAGGCCGATGCAAATGAGGAGCGGCTTTAG 1551 0.4326 MTIKIPLPSIQTVVSTATSLAATAMFFHSLLHNYLPDELYYYFRFKLSQLTTSLSNEFTTVIDEYETLTYNKLFQSAELFLHPDIAQHPKRFKTVMRPNEQNISLVIDRNEEIIHRFKRVDFKWRLIIQAIPPTYIKRHGASYEHHTMVKSSIRRFEVRFHKKHRNMALSEYFPFVMKRAKEIQGERKTLELFTLTNDRVLKRFGNMWQSVALDHPATFETLAMDNDLRNMILDDLDLFLERKEFYKSVGKPWKRGYLLYGPPGCGKSSLIAAMASYINFDVYDLELGDVLRNTELRSLLMSTQNRSILVVEDIDCTVELHNRLAFTVHPWLADKPRVTLSGFLNLIDGLWSSCGEERIIVFTTNHIDKLDPALLRPGRMDVHISLSYCSPCVFRELALNYLEMREHPLFAEVDKLLEKAKITPAEVGEHFLQNEDPEIAIRSLVELLEKMGQNNCEYKAIKEDVTTDSFKACNGFETEDGKIIILKFLHTDEGALVGEPSHVEPVLEADANEERL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01209 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 435 IPR027417 -
Vifa6g01209 516 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Vifa6g01209 516 PANTHER BCS1 AAA-TYPE ATPASE 15 454 - -
Vifa6g01209 516 SMART AAA_5 253 390 IPR003593 GO:0016887
Vifa6g01209 516 CDD RecA-like_BCS1 232 384 - -
Vifa6g01209 516 Gene3D - 385 454 - -
Vifa6g01209 516 Pfam ATPase family associated with various cellular activities (AAA) 258 387 IPR003959 GO:0005524|GO:0016887
Vifa6g01209 516 Pfam Domain associated at C-terminal with AAA 35 126 IPR025753 -
Vifa6g01209 516 Gene3D - 208 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01209 Vifa-Chr6 388480132 388485257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01209 219 428 Calmodulin-binding Proteins AT3G56690 27.477 2.98e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01209 K08900 - gmx:100789716 520.005