Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01207 ATGACTCAAAATGATTCTTCTTCCACCACTGTGTCTGTGGTATTAGTAAAAACTCAAAATATTTCCATTGCTATTTCGCCTCCAACCTTAAACGACACCAACGAGTCTAAGTCTAAGTGTCCATTTTCTTCACTTACAGGCGTCAAGTTATTAGAAGAGATAAGGAGAGGATCATTTGGAACTGTCTATAAAGGTAAAATAGGAGACAATAACAGAAGTATTGTCGTGAAGAGACTGGATGAGAGAATTGTTGAGGAAGGGGAGAGGGAATTTCAAACTAAAATTACGGCCATTGCTCGAACTCATCACAGGAATTTAGTAAAGCTTATTGGTTTCTGCATAGAAGGATCCAAGAAGCTACTTGTTTCAGCAAAGACCGATACAACCCTTTTAAGTAAAAGTCCAATTCAAATCATAGATGAGTTCAATAGTGGTAATGAAATGGATAATCCAAAACGTGGAAGGAGACAAATTAAAAAACCATCCTAG 489 0.3701 MTQNDSSSTTVSVVLVKTQNISIAISPPTLNDTNESKSKCPFSSLTGVKLLEEIRRGSFGTVYKGKIGDNNRSIVVKRLDERIVEEGEREFQTKITAIARTHHRNLVKLIGFCIEGSKKLLVSAKTDTTLLSKSPIQIIDEFNSGNEMDNPKRGRRQIKKPS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01207 162 SUPERFAMILY Protein kinase-like (PK-like) 37 122 IPR011009 -
Vifa6g01207 162 ProSiteProfiles Protein kinase domain profile. 48 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01207 162 Pfam Protein tyrosine and serine/threonine kinase 49 124 IPR001245 GO:0004672|GO:0006468
Vifa6g01207 162 MobiDBLite consensus disorder prediction 142 162 - -
Vifa6g01207 162 Gene3D Phosphorylase Kinase; domain 1 49 124 - -
Vifa6g01207 162 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 50 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01207 Vifa-Chr6 388471626 388473467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01207 54 122 Receptor kinase-like Gene Family AT4G23220 46.377 2.38e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa6g01207 PK_Tyr_Ser-Thr 1.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01207 - - cam:101496142 126.331