Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01190 ATGTTACACTGTCTCAACACTTCGGGTAATCTAATAGGAGGAGAAACGACCATTTCCGACATGACACTGTTACAAACACAAAAACCAACCATCAACTTTCAACAATTTTCTTCTTCTTCTCCACAGTTTATGATGGTGGCTTGTGATTCCGCTCTTGGCGGAGTCGTTGCTAATAATGGATTCGGAAAATATATCATTAAGAAAAGAAAAGCTGAAATTAATGATAGTAATAATAATAATTCTAAGGTTGTTGATGTTGTTCAAGAGTGTGACAAGAGGATCAAAATGAGTGCAGAAGAAGAGGAATCCAAAACCAGTGAGCAAACTACAAAGGGACACAAGAATACAAAGCTCAACAATGGATCGAAAAGAGAAAATTCTGGTGATACTAATTCAAAGGAAAAGCTTGATTACATTCATGTTCGAGCACGTCGTGGTCAAGCCACGGATAGTCATAGCTTAGCAGAAAGAGTTAGAAGGGAAAAAATAAGCGAGAGGATGAAGTATTTACAAGATTTAGTGCCAGGATGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCAGCTGTAAATCCAAGACTTGACTTCAACATTGATGAATTGTTTGTCAAAGAGATTTTTCCTCAAAATTTTCCAACCATAGGGATGCAATCAGACATGACTAACCCTACTACATATCTTCAATTTAATTCAGCACAACAACTAGTTTCAAGTTGTGGCGGATTAATAAACAATATGGGAATAATCTCTTCGGAAATCGGGCTTTGGAGGAACATTAGTATCCCCACGTCTACATCTTTACCCGAAATCTTTGACTCGTCATGTTTCACCCATATCTTACCCTCTTCAACTTGGGAAGGTGATTTTCAAAACCTTCACAGTGTGGATTTTGATCAAGGAAGATCATTGTCCTTTCCTTCTCAACCATTCACAGGCATGGTTGAAGCTAGCAATTTGAAGATGGAGATGTAA 1035 0.3739 MLHCLNTSGNLIGGETTISDMTLLQTQKPTINFQQFSSSSPQFMMVACDSALGGVVANNGFGKYIIKKRKAEINDSNNNNSKVVDVVQECDKRIKMSAEEEESKTSEQTTKGHKNTKLNNGSKRENSGDTNSKEKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFVKEIFPQNFPTIGMQSDMTNPTTYLQFNSAQQLVSSCGGLINNMGIISSEIGLWRNISIPTSTSLPEIFDSSCFTHILPSSTWEGDFQNLHSVDFDQGRSLSFPSQPFTGMVEASNLKMEM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01190 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 77 243 IPR024097 GO:0006355
Vifa6g01190 344 CDD bHLH_AtBPE_like 137 222 - -
Vifa6g01190 344 FunFam Basic helix-loop-helix transcription factor 144 216 - -
Vifa6g01190 344 MobiDBLite consensus disorder prediction 97 111 - -
Vifa6g01190 344 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Vifa6g01190 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 216 IPR036638 GO:0046983
Vifa6g01190 344 Gene3D - 144 218 IPR036638 GO:0046983
Vifa6g01190 344 MobiDBLite consensus disorder prediction 112 126 - -
Vifa6g01190 344 MobiDBLite consensus disorder prediction 97 135 - -
Vifa6g01190 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Vifa6g01190 344 SMART finulus 153 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01190 Vifa-Chr6 386535210 386537126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01190 60 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.606 4.47e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g01190 HLH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01190 - - gmx:100794256 362.844