Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01187 ATGGCGTCTGGAGATGCTGAGTACCGGTGCTTCGTCGGCGGTCTTGCATGGGCCACCGACAGCAAAGCTCTCGAGAACGCCTTCTCTTCTTACGGCGACATCATTGATTCGAAGATCATTAATGATCGTGAGACTGGAAGGTCTAGAGGTTTTGGATTTGTGACATTCGCTAATGAGAAGTCAATGAGAGATGCCATTGAGGGGATGAATGGTCAGAACATGGATGGACGTAACATTACTGTGAACGAAGCTCAGAACCGTAGCGGTGGTGGTGGTGGTGGAGGCGGTGGCTATGGTGGTCGTCGTGAAGGTGGAGATGGTGGATATGGTGGTCGTCGTGAAGGTGGAGGAGGAGGATATGGCGGTGGAGGTGGTTATGGTGGAAGCAGGGACCGTGGATATGGCAATGACGGTGGTTATTCCCGCGGTGGTGGTGGTGGGGGTGGAAACTGGAGGGAGTAG 462 0.5368 MASGDAEYRCFVGGLAWATDSKALENAFSSYGDIIDSKIINDRETGRSRGFGFVTFANEKSMRDAIEGMNGQNMDGRNITVNEAQNRSGGGGGGGGGYGGRREGGDGGYGGRREGGGGGYGGGGGYGGSRDRGYGNDGGYSRGGGGGGGNWRE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01187 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vifa6g01187 153 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 145 - -
Vifa6g01187 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vifa6g01187 153 MobiDBLite consensus disorder prediction 73 87 - -
Vifa6g01187 153 MobiDBLite consensus disorder prediction 68 153 - -
Vifa6g01187 153 SUPERFAMILY RNA-binding domain, RBD 8 126 IPR035979 GO:0003676
Vifa6g01187 153 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vifa6g01187 153 CDD RRM2_NsCP33_like 9 84 - -
Vifa6g01187 153 Gene3D - 2 103 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01187 Vifa-Chr6 384526196 384526943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01187 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 5.07e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01187 - K13195 qsu:112027985 157.147