Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01186 ATGGGTTCTTCCGATGCTGAGTACCGGTGCTTCGTCGGTGGCCTTGCCTGGACCACCGACAACGATGGCCTCGCCAAGGCATTCTCTAGTTACGGTGAAATCACTGATTCCAAGGTTATTATGGATCGTGAGACTGGACGGTCAAGAGGTTTTGGATTTGTGACGTTTGCTGCCGAGCAATCTATGAGAGATGCGATTGAAGGGATGAACGGTCAGGATGTTGATGGACGTAATATTACCGTGAATGAAGCTCAGTCCCGTGGAAGAGGTGGAGGCGGTGGTGGAGGTGGATACAACAGAAACGGCGGTGGTGGTGGAGGCTATAGCGGTGGAGGAGGTGGTTATGGTGGTGGAGGAAGTGGTGGATATGGTGGTGGAAGAGATCGTGGTTATGGAGGAGGTGGTGGTGATAGATATGGCGGTGGAGGCGGTGGTGGCGGTGGTGATAGAGGATATGGCGGTGGTGGTGGTGGCGGCGGCTACTCTCGTGGGGGCGATGGTGGCAGTGGTGGAAACTGGAGGGACTAG 528 0.553 MGSSDAEYRCFVGGLAWTTDNDGLAKAFSSYGEITDSKVIMDRETGRSRGFGFVTFAAEQSMRDAIEGMNGQDVDGRNITVNEAQSRGRGGGGGGGGYNRNGGGGGGYSGGGGGYGGGGSGGYGGGRDRGYGGGGGDRYGGGGGGGGGDRGYGGGGGGGGYSRGGDGGSGGNWRD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01186 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vifa6g01186 175 SUPERFAMILY RNA-binding domain, RBD 7 118 IPR035979 GO:0003676
Vifa6g01186 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vifa6g01186 175 Gene3D - 2 115 IPR012677 -
Vifa6g01186 175 CDD RRM2_NsCP33_like 9 84 - -
Vifa6g01186 175 PANTHER GEO13361P1-RELATED 4 166 - -
Vifa6g01186 175 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vifa6g01186 175 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01186 Vifa-Chr6 383831702 383832553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01186 10 87 Eukaryotic Initiation Factors Gene Family AT1G22760 34.177 1.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01186 - - psat:127105342 169.474