Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01185 ATGGCTGCCTCAGATGCCGAGTACCGGTGCTTCGTTGGTGGTCTAGCATGGGCCACTGACAACGAAGCCCTAGAGAAAGCTTTCTCTCAATACGGTGACATCCTCGACTCGAAGATTATTAACGATCGTGAGACTGGAAGGTCAAGAGGTTTTGGATTTGTCACATTCGCTGATGAGAAGTCAATGAAAGATGCGATCGAAGGGATGAACGGTCAGGACATGGACGGACGTAACATCACTGTAAACCAAGCTCAGAGCCGTGGTAGTGGTGGAGGAGGCCGTGGTGGCGGTGGATATGGAGGGGGCCGTGGCGGTGGAGGATATGGTGGTGGCGGAGGCTATGGTGGCCGTCGTGAAGGTGGAGGAGGATACGGTAATGGTGGAGGAGGATATGGTGGTGGAGGTGGTTACGGAGGAAGCAGAGACCGTGGATATGGAGGAAGTGGTGGTGGAGGTGGATATTCTCGTGGCGGAGGTGGTGATGGTGGAAACTGGAGGGAGTAG 504 0.5476 MAASDAEYRCFVGGLAWATDNEALEKAFSQYGDILDSKIINDRETGRSRGFGFVTFADEKSMKDAIEGMNGQDMDGRNITVNQAQSRGSGGGGRGGGGYGGGRGGGGYGGGGGYGGRREGGGGYGNGGGGYGGGGGYGGSRDRGYGGSGGGGGYSRGGGGDGGNWRE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01185 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vifa6g01185 167 MobiDBLite consensus disorder prediction 75 89 - -
Vifa6g01185 167 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vifa6g01185 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vifa6g01185 167 FunFam Glycine-rich RNA-binding protein GRP1A 2 117 - -
Vifa6g01185 167 Gene3D - 2 108 IPR012677 -
Vifa6g01185 167 MobiDBLite consensus disorder prediction 69 167 - -
Vifa6g01185 167 SUPERFAMILY RNA-binding domain, RBD 7 116 IPR035979 GO:0003676
Vifa6g01185 167 CDD RRM2_NsCP33_like 9 84 - -
Vifa6g01185 167 PANTHER GEO13361P1-RELATED 3 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01185 Vifa-Chr6 383818366 383819152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01185 10 81 Eukaryotic Initiation Factors Gene Family AT1G22760 41.667 1.42e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01185 - K13195 brp:103842502 155.606