Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01182 ATGCTTCTTTCATGTCAAAATCACACTCTTTACCTTCCTTATTCTTCTACCCATTCCTCAAAGAACTCAAGACCCAACATCATCATCAATTGCCAAAACCCAAACGACATTCCCAGGAGACACAATTCAAAATCTACATCATTTCTCATCCACCACCTTTCACACAAAAACAGCGACAATCACCACCCTTCACCCACCGAACTACAAGACCCAACACCGCACGAAGAAAAAGTTAAGCTTTTAGAACTTTCCTTAGTAAGGAAAAGAACCCCACAATTTCCTGGTTCAATTTATGCTCAATCCCCTACTGACTCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTAGATCTTCCGGTGATGATGAAGAAGAAGAAGAGGTCATGATTATGAAAGCTCTTGGAATTCGTAGGAAGGTTACTCAAGAGGTTTTCAAAGAAGCTATGAGAAAGGGTAAATTTGGAATTACTTATATAGAGAATCTGGTTTCTAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAACTTGAAAAGATTGCCTCAGTATTCTCAATCCACTTTCAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCAACTTATTAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCGTTATGATGTCAAGGGGGAAACTTGAGTCCATAAGGAACCGGATTGAGTGGTTGAAGTCGGTGCATGTTAAGGGAGACTTTATTGGGGAGGCAATGTTGAAGGGTGGAGATAATATTTTGCTGCGGAGTGATCAGGAGCTTGATGAGATTGTTGAGTGTTTAGAGTCCAATGGTGTAAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGATTCGTGTCCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGTACCATGGTTTTCGATTTTCCTAAAGCACTTGGTAACTATACTATGGAAGAAATGAACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGATAGTAAGGATGTTGGTAAGCTGCTTGCATTTAGGCCACAATTAATGGCATGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGGATGCTTACCATTAAACCGATGGTCTTTTGTGTTGACTTGGAGATGACCATTGTACCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCGAACATGCTTGTAAAGTTTCCTACTCTACTCACCTACAGCCTGTACAAGAAGATTAGGCCTGTGAGGCCTCAATTGACTCATGGGCTGAATTTGCATGTTGTTAAGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGGTGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATCATTTGTCTCTTGGCATTCGTCTTCGGCAACTGGGTGAAATGGTTGCTGATTTCCCAATGCTGCTGAGATACAATATAGATGTTCTTCGTCCTAAGTATACGTATTTGCGGAAAACCATGGTCCGAACTTTGCAAGATCTCATTGAGTTTCCGAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATAATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATAAATGTCAAGCTAAAATGCATGTTAGCTTGTACAGATGAAGAGTTTAACAAAATGGTCAAGAATACGATTCGAAAACGCCACAAATTTCAATCTACTGTCATGAAGGGGGATACTCCGCATCCCCAATCTCTTGATACTGGGGATATTACTACACCCCAGACGTAA 1914 0.4091 MLLSCQNHTLYLPYSSTHSSKNSRPNIIINCQNPNDIPRRHNSKSTSFLIHHLSHKNSDNHHPSPTELQDPTPHEEKVKLLELSLVRKRTPQFPGSIYAQSPTDSDVGSSLPPLRTLFRSSGDDEEEEEVMIMKALGIRRKVTQEVFKEAMRKGKFGITYIENLVSRLGGFIDYVMIEAANLKRLPQYSQSTFNLRAKTVIEDSQVVQLIRWLKHNSLSYPQIAKLVMMSRGKLESIRNRIEWLKSVHVKGDFIGEAMLKGGDNILLRSDQELDEIVECLESNGVRREWMGYVVSRCPKLLSYSLEEVKIRVQFYLDMGLDEKDFGTMVFDFPKALGNYTMEEMNRKVDYLKEFGLDSKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMKRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVRPQLTHGLNLHVVKVIFLMTKAGVTEESIGKVVALGPELLGCSIVHKLEVNVKYHLSLGIRLRQLGEMVADFPMLLRYNIDVLRPKYTYLRKTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNKMVKNTIRKRHKFQSTVMKGDTPHPQSLDTGDITTPQT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01182 637 MobiDBLite consensus disorder prediction 613 637 - -
Vifa6g01182 637 MobiDBLite consensus disorder prediction 618 637 - -
Vifa6g01182 637 Pfam mTERF 341 449 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 Pfam mTERF 470 598 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 Pfam mTERF 118 351 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 Gene3D Transcription termination factor 3, mitochondrial 353 615 IPR038538 -
Vifa6g01182 637 SMART mt_12 485 516 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 553 584 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 434 480 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 SMART mt_12 521 551 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 PANTHER CGI-12 PROTEIN-RELATED 265 364 IPR003690 GO:0003690|GO:0006355
Vifa6g01182 637 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01182 Vifa-Chr6 382572354 382574980 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa6g01182 mTERF 4.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01182 K15032 - zju:107426883 832.402