Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01181 ATGCTTCTTTCATGTCAAAATCACACTCTTTACCTTCCTTATTCTTCTACCCATTCCTCAAAGAACTCAAGACCCAACATCATCATCAATTGCCAAAACCCAAACGACATTCCCAGGAGACACAATTCAAAATCTACATCATTTCTCATCCACCACCTTTCACACAAAAACAGCGACAATCACCACCCTTCACCCACCGAACTACAAGACCCAACACCGCACGAAGAAAAAGTTAAGCTTTTAGAACTTTCCTTAGTAAGGAAAAGAACCCCACAATTTCCTGGTTCAATTTATGCTCAATCCCCTACTGACTCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTAGATCTTCCGGTGATGATGAAGAAGAAGAAGAGGTCATGATTATGAAAGCTCTTGGAATTCGTAGGAAGGTTACTCAAGAGGTTTTCAAAGAAGCTATGAGAAAGGGTAAATTTGGAATTACTTATATAGAGAATCTGGTTTCTAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAACTTGAAAAGATTGCCTCAGTATTCTCAATCCACTTTCAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCAACTTATTAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCGTTATGATGTCAAGGGGGAAACTTGAGTCCATAAGGAACCGGATTGAGTGGTTGAAGTCGGTGCATGTTAAGGGAGACTTTATTGGGGAGGCAATGTTGAAGGGTGGAGATAATATTTTGCTGCGGAGTGATCAGGAGCTTGATGAGATTGTTGAGTGTTTAGAGTCCAATGGTGTAAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGATTCGTGTCCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGTACCATGGTTTTCGATTTTCCTAAAGCACTTGGTAACTATACTATGGAAGAAATGAACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGATAGTAAGGATGTTGGTAAGCTGCTTGCATTTAGGCCACAATTAATGGCATGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGGATGCTTACCATTAAACCGATGGTCTTTTGTGTTGACTTGGAGATGACCATTGTACCAAAGGACCTAGGGGTTCGAAATGACGGGATTGCGAACATGCTTGTAAAGTTTCCTACTCTACTCACCTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGGTGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATCATTTGTCTCTTGGCATTCGTCTTCGGCAACTGGGTGAAATGGTTGCTGATTTCCCAATGCTGCTGAGATACAATATAGATGTTCTTCGTCCTAAGTATACGTATTTGCGGAAAACCATGGTCCGAACTTTGCAAGATCTCATTGAGTTTCCGAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATAATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATAAATGTCAAGCTAAAATGCATGTTAGCTTGTACAGATGAAGAGTTTAACAAAATGGTCAAGAATACGATTCGAAAACGCCACAAATTTCAATCTACTGTCATGAAGGGGGATACTCCGCATCCCCAATCTCTTGATACTGGGGATATTACTACACCCCAGACGTAA 1857 0.4098 MLLSCQNHTLYLPYSSTHSSKNSRPNIIINCQNPNDIPRRHNSKSTSFLIHHLSHKNSDNHHPSPTELQDPTPHEEKVKLLELSLVRKRTPQFPGSIYAQSPTDSDVGSSLPPLRTLFRSSGDDEEEEEVMIMKALGIRRKVTQEVFKEAMRKGKFGITYIENLVSRLGGFIDYVMIEAANLKRLPQYSQSTFNLRAKTVIEDSQVVQLIRWLKHNSLSYPQIAKLVMMSRGKLESIRNRIEWLKSVHVKGDFIGEAMLKGGDNILLRSDQELDEIVECLESNGVRREWMGYVVSRCPKLLSYSLEEVKIRVQFYLDMGLDEKDFGTMVFDFPKALGNYTMEEMNRKVDYLKEFGLDSKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMKRMLTIKPMVFCVDLEMTIVPKDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVVALGPELLGCSIVHKLEVNVKYHLSLGIRLRQLGEMVADFPMLLRYNIDVLRPKYTYLRKTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNKMVKNTIRKRHKFQSTVMKGDTPHPQSLDTGDITTPQT 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01181 618 Gene3D Transcription termination factor 3, mitochondrial 353 596 IPR038538 -
Vifa6g01181 618 SMART mt_12 534 565 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 502 532 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 466 497 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 SMART mt_12 429 461 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 MobiDBLite consensus disorder prediction 594 618 - -
Vifa6g01181 618 PANTHER CGI-12 PROTEIN-RELATED 265 358 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 Pfam mTERF 234 413 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 Pfam mTERF 118 352 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 Pfam mTERF 419 579 IPR003690 GO:0003690|GO:0006355
Vifa6g01181 618 MobiDBLite consensus disorder prediction 599 618 - -
Vifa6g01181 618 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01181 Vifa-Chr6 382572354 382574980 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa6g01181 mTERF 1.4e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01181 K15032 - zju:107426883 828.935