Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01180 ATGCTTCTTTCATGTCAAAATCACACTCTTTACCTTCCTTATTCTTCTACCCATTCCTCAAAGAACTCAAGACCCAACATCATCATCAATTGCCAAAACCCAAACGACATTCCCAGGAGACACAATTCAAAATCTACATCATTTCTCATCCACCACCTTTCACACAAAAACAGCGACAATCACCACCCTTCACCCACCGAACTACAAGACCCAACACCGCACGAAGAAAAAGTTAAGCTTTTAGAACTTTCCTTAGTAAGGAAAAGAACCCCACAATTTCCTGGTTCAATTTATGCTCAATCCCCTACTGACTCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTAGATCTTCCGGTGATGATGAAGAAGAAGAAGAGGTCATGATTATGAAAGCTCTTGGAATTCGTAGGAAGGTTACTCAAGAGGTTTTCAAAGAAGCTATGAGAAAGGGTAAATTTGGAATTACTTATATAGAGAATCTGGTTTCTAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAACTTGAAAAGATTGCCTCAGTATTCTCAATCCACTTTCAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCAACTTATTAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCGTTATGATGTCAAGGGGGAAACTTGAGTCCATAAGGAACCGGATTGAGTGGTTGAAGTCGGTGCATGTTAAGGGAGACTTTATTGGGGAGGCAATGTTGAAGGGTGGAGATAATATTTTGCTGCGGAGTGATCAGGAGCTTGATGAGATTGTTGAGTGTTTAGAGTCCAATGGTGTAAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGATTCGTGTCCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGTACCATGGTTTTCGATTTTCCTAAAGCACTTGGTAACTATACTATGGAAGAAATGAACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGATAGTAAGGATGTTGGTAAGCTGCTTGCATTTAGGCCACAATTAATGGCATGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGGATGCTTACCATTAAACCGATGGTCTTTTGTGTTGACTTGGAGATGACCATTGTACCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCGAACATGCTTGTAAAGTTTCCTACTCTACTCACCTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGGTGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATCATTTGTCTCTTGGCATTCGTCTTCGGCAACTGGGTGAAATGGTTGCTGATTTCCCAATGCTGCTGAGATACAATATAGATGTTCTTCGTCCTAAGTATACGTATTTGCGGAAAACCATGGTCCGAACTTTGCAAGATCTCATTGAGTTTCCGAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATAATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATAAATGTCAAGCTAAAATGCATGTTAGCTTGTACAGATGAAGAGTTTAACAAAATGGTCAAGAATACGATTCGAAAACGCCACAAATTTCAATCTACTGTCATGAAGGGGGATACTCCGCATCCCCAATCTCTTGATACTGGGGATATTACTACACCCCAGACGTAA 1872 0.4087 MLLSCQNHTLYLPYSSTHSSKNSRPNIIINCQNPNDIPRRHNSKSTSFLIHHLSHKNSDNHHPSPTELQDPTPHEEKVKLLELSLVRKRTPQFPGSIYAQSPTDSDVGSSLPPLRTLFRSSGDDEEEEEVMIMKALGIRRKVTQEVFKEAMRKGKFGITYIENLVSRLGGFIDYVMIEAANLKRLPQYSQSTFNLRAKTVIEDSQVVQLIRWLKHNSLSYPQIAKLVMMSRGKLESIRNRIEWLKSVHVKGDFIGEAMLKGGDNILLRSDQELDEIVECLESNGVRREWMGYVVSRCPKLLSYSLEEVKIRVQFYLDMGLDEKDFGTMVFDFPKALGNYTMEEMNRKVDYLKEFGLDSKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMKRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVVALGPELLGCSIVHKLEVNVKYHLSLGIRLRQLGEMVADFPMLLRYNIDVLRPKYTYLRKTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNKMVKNTIRKRHKFQSTVMKGDTPHPQSLDTGDITTPQT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01180 623 Gene3D Transcription termination factor 3, mitochondrial 366 601 IPR038538 -
Vifa6g01180 623 MobiDBLite consensus disorder prediction 599 623 - -
Vifa6g01180 623 Pfam mTERF 307 584 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 Pfam mTERF 118 352 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 PANTHER CGI-12 PROTEIN-RELATED 265 358 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 MobiDBLite consensus disorder prediction 604 623 - -
Vifa6g01180 623 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 434 466 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 539 570 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 SMART mt_12 507 537 IPR003690 GO:0003690|GO:0006355
Vifa6g01180 623 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01180 Vifa-Chr6 382572354 382574980 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa6g01180 mTERF 2.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01180 K15032 - zju:107426883 842.032