Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01155 ATGAAAAGCATCGGATGTTATTTGCTAGTATTCTTCTATGTCTTATTTACACCTTGTTTTTCAATAAACGATCTCGATGCATTGCTAAAGCTTAAAGAATCAATGAAAGGAGAGAAATCAAAACACGGCGATTCACTCGGAGACTGGAAGTTTTCCAGTTCTGTTTCAGCTCACTGTTCGTTCTCCGGTGTAAAATGCGATCAAGATAAACGAGTGATAGCTCTGAACTTGACACAAGTTCCACTCTTTGGAAAAATTTCTAAGGAGATTGGAGTGTTGGATAAACTCGAGAGCCTCATTCTCACCATGGATAATCTCACTGGTGAGCTTCCGTTTGAGATATCCAATCTTACCTCTCTGAAAATCCTAAACATCTCTCACAACACCTTCTCTGGAAACTTCCCCGGCAACATCACTCTCCGTATGCCTAAACTGGAGATTCTTGATGCTTATGACAATAGCTTCGCAGGTCATCTTCCTGAGGAAATCGTTAGCCTCAAGGAACTTAAGTTCTTATGTCTTGCCGGAAATTATTTCACTGGTACTATACCAGAGAGTTACTCGGAGTTTCAGAAGTTGGAGATTTTAAGAATAAATGCAAACAGTTTATCAGGGAAGATTCCTAAGAGCTTGTCTAAATTAAAGACGCTGAAGGAACTCCGGTTAGGTTACAACAACGCTTACGAAGGTGGAGTTCCACCGGAGTTCGGTTCATTGAAATCTCTCAGATATCTTGAAGTGTCTAACTGTAACCTCACCGGAGAAATTCCACCGAGTTTTGGAAATTTAGAAAACCTAGACAGCTTGTTCTTGCAAATGAACAACCTCACCGGAACAATTCCACTGGAACTCTCTTCCATGAGGAGTCTCATGTCGTTGGATCTCTCTAACAACGAACTCTCCGGAGAGATTCCAGAGAGCTTCTCAAATCTCAAAAACCTTACTCTGTTGAATTTCTTCCAAAACAAGTTTCGCGGTTCTATTCCGACATTTATAGGCGACCTTCCGAATCTAGAAACTCTTCAGATTTGGGAAAACAATTTCTCTTTTGTATTACCACAAAATCTCGGTTCGAATGGGAAGTTCATTTTCTTCGACGTTACGAAGAATCATCTCACCGGATTGATTCCACCGGATTTATGCAAATCGGAGAAATTGCAAACGTTTATCGTTACGGATAACTTCTTCCACGGTCCAATGCCTAAAGGAATCGGCGCATGTAAGTCACTTCTCAAAATCAGAGTGGCCAATAACTACTTAGATGGGCCGGTCCCACAAGGGATTTTTCAATTGCCTTCTATAACGATAATAGAGCTTGGAAATAACCGTTTTAACGGACAACTGCCTTCTGAAGTTTCCGGCGCTTCTCTCGGGATTCTCACTATCTCTAACAACTTATTCACCGGGAGGATTCCGGCTTCGATGAAGAATCTCATATCACTTCAGACGCTGTTGCTCGACGCAAATCAGTTCGTCGGAGAAATTCCGGAGGAAGTTTTTGACTTACCAGTGTTGACGAACTTCAACATAAGTGGTAACAATCTCATCGGTGTAATTCCAACGACGGTTTCTCAGTGTAGATCGTTGACAGCCGTAGACTTCAGCCGGAACATGCTTACCGGCGATGTTCCGAAGGGAATGAAGAATCTGAAGGTTCTCAGCATTTTTAATCTTTCACATAACAACATTTCAGGAGTAATCCCGGACGAGATTCGATTCATGACGAGTCTCACGACACTGGATCTATCCTACAACAATTTCACCGGAATAGTCCCTACCGGCGGTCAGTTTTTGGTTTTCAACGACAGGTCGTTTTTCGGAAACCCTAACCTTTGTTTCCCACACCAATCCTCATGCTCTTCCTGTATCTTCCCCTCAAGAAAAAACCACACGAAGGTGAAGTTCATTGTTACAGCGATTGCTCTCGCCACAGCAGTGTTATTAGTATTGGTGACGATGCACATGATGAGAAAGAGAAAGCTTCATATAGCGAAAGCATGGAAGTTAACAGCGTTTCAGAGACTAGACTTCAAAGCAGAGGAAGTCGTGGAGTGTTTGAAAGAAGAGAACATAATAGGAAAAGGAGGAGCTGGGATCGTGTACAGAGGGTCCATGCCAAACGGAACAGATGTAGCGATAAAGCGTTTAGTTGGACAAGGAAGTGGAAGAAACGATTACGGGTTCAAAGCAGAGATAGAAACATTGGGCAGAATCAGACACAGAAACATAATGAGGCTATTGGGTTATGTTTCAAATAAGGACACAAATTTGTTGCTGTATGAGTACATGCCGAATGGTAGTTTAGGAGAATGGCTTCATGGTGCAAAAGGTTGTCATTTGAGTTGGGAAATGAGGTATAAAATTGCAGTGGAAGCTGCTAAAGGACTTTGCTATTTGCACCATGATTGTTCACCTCTTATTATTCATAGGGATGTCAAGTCCAATAATATATTGCTAGATGCTGATTTTGAAGCCCATGTTGCTGATTTTGGACTCGCTAAGTTTTTATATGACCCAGGTGCTTCTCAGTCCATGTCCTCTATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTATACGCTGAAAGTGGATGAGAAAAGTGATGTGTATAGCTTTGGGGTGGTGCTATTGGAGCTGATTATAGGAAGGAAACCAGTGGGTGAGTTTGGAGATGGAGTGGACATCGTTGGATGGATCAACAAAACTGAATTAGAGCTATATCAGCCGTCAGATAAAGCATTGGTGTCCGCAGTGGTGGACCCGCGACTCACCGGATACCCAATGGCTAGTGTTATCTACATGTTCCACATAGCTATCATGTGTGTTAAAGAAATGGGACCTGCAAGGCCTACCATGAGGGAAGTAGTTCATATGCTCACTAATCCACCTCAGTGTACCACTCAAAACAACCTCATTAATCTTTAG 2931 0.4248 MKSIGCYLLVFFYVLFTPCFSINDLDALLKLKESMKGEKSKHGDSLGDWKFSSSVSAHCSFSGVKCDQDKRVIALNLTQVPLFGKISKEIGVLDKLESLILTMDNLTGELPFEISNLTSLKILNISHNTFSGNFPGNITLRMPKLEILDAYDNSFAGHLPEEIVSLKELKFLCLAGNYFTGTIPESYSEFQKLEILRINANSLSGKIPKSLSKLKTLKELRLGYNNAYEGGVPPEFGSLKSLRYLEVSNCNLTGEIPPSFGNLENLDSLFLQMNNLTGTIPLELSSMRSLMSLDLSNNELSGEIPESFSNLKNLTLLNFFQNKFRGSIPTFIGDLPNLETLQIWENNFSFVLPQNLGSNGKFIFFDVTKNHLTGLIPPDLCKSEKLQTFIVTDNFFHGPMPKGIGACKSLLKIRVANNYLDGPVPQGIFQLPSITIIELGNNRFNGQLPSEVSGASLGILTISNNLFTGRIPASMKNLISLQTLLLDANQFVGEIPEEVFDLPVLTNFNISGNNLIGVIPTTVSQCRSLTAVDFSRNMLTGDVPKGMKNLKVLSIFNLSHNNISGVIPDEIRFMTSLTTLDLSYNNFTGIVPTGGQFLVFNDRSFFGNPNLCFPHQSSCSSCIFPSRKNHTKVKFIVTAIALATAVLLVLVTMHMMRKRKLHIAKAWKLTAFQRLDFKAEEVVECLKEENIIGKGGAGIVYRGSMPNGTDVAIKRLVGQGSGRNDYGFKAEIETLGRIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGCHLSWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWINKTELELYQPSDKALVSAVVDPRLTGYPMASVIYMFHIAIMCVKEMGPARPTMREVVHMLTNPPQCTTQNNLINL 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01155 976 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 191 956 - -
Vifa6g01155 976 SUPERFAMILY RNI-like 75 422 - -
Vifa6g01155 976 Gene3D Ribonuclease Inhibitor 140 226 IPR032675 -
Vifa6g01155 976 ProSiteProfiles Protein kinase domain profile. 686 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01155 976 PRINTS Leucine-rich repeat signature 290 303 - -
Vifa6g01155 976 PRINTS Leucine-rich repeat signature 574 587 - -
Vifa6g01155 976 FunFam Leucine-rich repeat receptor-like protein kinase 22 185 - -
Vifa6g01155 976 SMART LRR_typ_2 239 262 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 431 455 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 478 502 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 574 597 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 142 166 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 335 359 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 287 310 IPR003591 -
Vifa6g01155 976 SMART LRR_typ_2 550 573 IPR003591 -
Vifa6g01155 976 SUPERFAMILY L domain-like 328 624 - -
Vifa6g01155 976 Gene3D Ribonuclease Inhibitor 23 139 IPR032675 -
Vifa6g01155 976 Gene3D Ribonuclease Inhibitor 227 332 IPR032675 -
Vifa6g01155 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 655 762 - -
Vifa6g01155 976 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515
Vifa6g01155 976 Pfam Leucine rich repeat 527 587 IPR001611 GO:0005515
Vifa6g01155 976 Gene3D Ribonuclease Inhibitor 351 622 IPR032675 -
Vifa6g01155 976 SMART serkin_6 686 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01155 976 Pfam Leucine rich repeat N-terminal domain 23 67 IPR013210 -
Vifa6g01155 976 Pfam Protein tyrosine and serine/threonine kinase 687 960 IPR001245 GO:0004672|GO:0006468
Vifa6g01155 976 Gene3D Phosphorylase Kinase; domain 1 651 762 - -
Vifa6g01155 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 227 331 - -
Vifa6g01155 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Vifa6g01155 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 975 - -
Vifa6g01155 976 Gene3D Transferase(Phosphotransferase) domain 1 763 973 - -
Vifa6g01155 976 SUPERFAMILY Protein kinase-like (PK-like) 679 961 IPR011009 -
Vifa6g01155 976 FunFam LRR receptor-like serine/threonine-protein kinase EFR 332 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01155 Vifa-Chr6 373884381 373887428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01155 17 966 Receptor kinase-like Gene Family AT1G75820 61.707 0.0 1207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa6g01155 PK_Tyr_Ser-Thr 8.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01155 K00924 - gmx:732625 1437.55