Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01148 ATGGCTTCCAATTCTTCTCCCATGGATTTCGATCCTTCGTCACCGGACATTCCCCCCTCCAGTCCAATTCCCAACACAGTATCCACTCCCGGCCGTAGACGCCGCCGTCAATCTACTACCCCGTCTGCATACGGAACTCCGCAGGGTAACCGATCTCGCTTGGCTTCCTCTGATGTTACCCCAACTCCGTCACGCCACCGCAGAGGCGGTGGTATCCCATCTGGCCGTCGTGTCCCCGCTACGCCGACCTCCACCTCCGACGACGTACCGATGTCTTCTGAAGGTGGAGACGGTTATGACATGGATGACGCTGGTCCCACCTACGTCTGGGGTACTAACATCAGTGTTGAAGATGTGAACGATGCGATTCAGAGGTTTTTGAAGCATTTCAGGGAAAAATCTACTTCGCAGGGGGGTATTGATGATTTGGATACTGAGGGGAAGTATGAGAAATTGATTAAACAGGTTATTGAACTAGAAGGTGAATCTATTGATGTTGATGCTCGTGATGTGTTTGATCATGATCCTGATTTGTATACCAAGATGGTTAGGTACCCTCTCGAGGTGCTGGCTATTTTTGATATGGTTTTGATGAACATGGTGACCAGAATGAAACCCATGTTTGAGAAGCATGTGCAGGCTCGGATTTTTAATCTCAAAACCTCAACTTCTATGAGAAATTTGAACCCTTCTGATGTTGAGAGGATGATCTCAATGAAGGGAATGATTATTCGGAGCAGCTCAATTATACCTGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATACTGCTCTGACCCGGTTCTTGTGGAGAGGGGACGAATAGCTGAACCTACGGTATGCCTGAGGGAGGAGTGTCAGTCCAGAAATTCAATGACACTTGTTCACAACCGATGCAAGTTTACCGATAAACAAATTGTGCGGCTCCAGGAGACACCCGACGAGATACCTGAAGGAGGAACACCTCACACTGTTAGTTTGCTGATGCATGACAAGCTGGTGGATACTGGAAAGCCAGGTGACCGAGTTGAGGTAACTGGTATATACAGGGCTATGAGTGTCAGGGTGGGACCAACTCAAAGAACTGTTAAGTCATTGTTCAAAACCTATATTGATTGTCTACACATAAAGAAAACTTCAAAGTCCCGGATGCTAGTTGAGGATGCTATGGAGGCTGACAACGGCCAGGGCAGAAGTGCAGAGGAAGTTATATTTAGTGAAGAAAAGGTAGCTCAACTGAAGGAGCTATCAAAACAACCAGATATTTATGAAAAGCTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGTGGAAATGCTTTGAAGTTGGCAACTGGTGCAAGCTTTCGTGGTGATATAAATGTTCTCCTTGTTGGTGATCCTGGAACAAGCAAGTCACAGCTACTTCAGTACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCTGTTGGGTTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGACAGAGGTATCTGCTGCATAGATGAATTCGACAAAATGTCTGACAATGCAAGAAGCATGTTGCATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTTAATGCTAGGACATCTGTGTTGGCCTGTGCAAATCCTAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAATATACACCTTCCCCCCACTCTTTTATCCAGGTTTGATTTAATTTACTTATTACTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTTTCCCTACACTTTAAGGATCATGAGACCATGGAGCAGGATGTGTTAGATATTTCTACACTAACTGATTATGTCAGCTATGCCCGAAAGCATATACATCCACAGCTGTCAGATGAAGCTGCTGATGAATTGATTACCGGCTATGTAAAAATAAGGGGTAGGGGAAAATTTACTGGCAGTAGCAAAAAGGTAATTACCGCAACTCCAAGGCAGATTGAAAGTCTGTTACGCCTTAGTGAAGCATTGGCTAGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGACGTATTAGAGGCATTTCGGCTTCTGGAAGTTGCGATGCAGCAGTCTGCAATGGATATAAAAACTGGAACTATTGACATGGATCTTATTACTACTGGTGTTTCGGCAAGTGAAAGGATCAGACGAGAGAATTTGATTCAAGACACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACGGTCCATGCGTTTATTGGAGATATTGGAAGAATTGAAGAATCAGAGCCCTGGAAACGAAATTCATCTTAATGACTTAAGGAATGCAGTTTCTACTCTTGCCAGCGAAGGATTTCTTTCCATGGCTGGTGACAGTGTAAAAAGAACATGA 2505 0.4487 MASNSSPMDFDPSSPDIPPSSPIPNTVSTPGRRRRRQSTTPSAYGTPQGNRSRLASSDVTPTPSRHRRGGGIPSGRRVPATPTSTSDDVPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSTSQGGIDDLDTEGKYEKLIKQVIELEGESIDVDARDVFDHDPDLYTKMVRYPLEVLAIFDMVLMNMVTRMKPMFEKHVQARIFNLKTSTSMRNLNPSDVERMISMKGMIIRSSSIIPEIREAIFRCLVCGYCSDPVLVERGRIAEPTVCLREECQSRNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEADNGQGRSAEEVIFSEEKVAQLKELSKQPDIYEKLTKSLAPNIWELDDVKKGLLCQLFGGNALKLATGASFRGDINVLLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLLLDKADEQTDRRLAKHIVSLHFKDHETMEQDVLDISTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFTGSSKKVITATPRQIESLLRLSEALARIRFSEWVEKHDVLEAFRLLEVAMQQSAMDIKTGTIDMDLITTGVSASERIRRENLIQDTRNIIMEKMQIGGRSMRLLEILEELKNQSPGNEIHLNDLRNAVSTLASEGFLSMAGDSVKRT 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01148 834 ProSitePatterns MCM family signature. 533 541 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vifa6g01148 834 Gene3D - 405 750 IPR027417 -
Vifa6g01148 834 Gene3D - 252 304 - -
Vifa6g01148 834 ProSiteProfiles MCM family domain profile. 424 630 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 553 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 577 589 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 604 612 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 Pfam MCM AAA-lid domain 650 736 IPR041562 -
Vifa6g01148 834 FunFam DNA helicase 405 743 - -
Vifa6g01148 834 Pfam MCM P-loop domain 412 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 737 IPR027417 -
Vifa6g01148 834 Pfam MCM OB domain 225 354 IPR033762 -
Vifa6g01148 834 Gene3D - 225 364 IPR012340 -
Vifa6g01148 834 SMART AAA_5 466 616 IPR003593 GO:0016887
Vifa6g01148 834 FunFam DNA helicase 252 304 - -
Vifa6g01148 834 CDD MCM4 427 736 - -
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 440 451 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 586 603 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 738 747 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 298 310 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifa6g01148 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 247 260 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vifa6g01148 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 120 789 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 MobiDBLite consensus disorder prediction 26 63 - -
Vifa6g01148 834 Gene3D - 113 219 - -
Vifa6g01148 834 SUPERFAMILY Nucleic acid-binding proteins 141 375 IPR012340 -
Vifa6g01148 834 SMART mcm 221 738 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vifa6g01148 834 MobiDBLite consensus disorder prediction 1 104 - -
Vifa6g01148 834 Pfam MCM N-terminal domain 122 221 IPR027925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01148 Vifa-Chr6 372279723 372284293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01148 1 833 Core DNA Replication Machinery Family AT2G16440 72.611 0.0 1233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01148 K02212 - gmx:100805788 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01148 6 372279723 372284293 Vifa6g01148 6 372279723 372284293 ECH