Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01126 ATGGAAATTGTGGTGGCGGAAGCGTTGAAAACAAGCTTAAGGACAGAGTCTGTTTTTTCACAAACGATTAGCGAGGAAATTTTGTGTTTGAACGCGAACAACGTTGTTGTCGGTGAAGATTTCTCTGTCGACGACTTGCTTGATTTTTCAAACGGAGAATTTCAACACGGTTCTGTCGGAAAAGAAATTGATAAAATTGATAATTACGAGGAGGAGGAAGAAGAACATGAAAAAAACAGCACCACCTCTGGTTCTGAGCATGACCGAACAGAAGACGACGGGAATTCTAATTCCATAACGTTTTCCGGTACCGGCGAGTCTGACACCATTTTTGCCGGCGAGTTAGCAGTTCCGGCTGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGATGACTCACTGCCGGAGCTCTCTCTATTGTATCCCGTTCAAGCCCGGGTTGAACCGGAACCTAGACCGGGTCCAAGCCCAAGGCCAACCAAAGCTCCTTCTCATCTCACTTTAATCCGGAGAAAGCCTAGAACCAACAAGACTAGAAGGCCCAACTGTAACATGTGGTCCTTCAACCCTATTCTGTGTAAAACAAAGAAGCAGAGGAAAAAGCCCGAGGCTCAGACAGGTGGAGCTCAGTTTCAGAGGCGGTGCAGCCACTGCCAGGTACAGAAAACGCCACAGTGGAGAACCGGTCCGCTTGGACCTAAGACACTATGTAACGCTTGTGGTGTTCGGTATAAGTCGGGTAGGCTTTTTCCGGAGTATAGACCGGCTTCAAGCCCGACGTTTTCCGGGAATATCCACTCGAACAGCCACCGTAAGGTTCTGGAGATGAGGCGGAGGAAGGAAACGGAAGAATCGGTATCCGGTCTGAACCGGAATCAAATGGCGTGGAGTTGCTGA 903 0.4862 MEIVVAEALKTSLRTESVFSQTISEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDKIDNYEEEEEEHEKNSTTSGSEHDRTEDDGNSNSITFSGTGESDTIFAGELAVPADDVADLEWVSHFVDDSLPELSLLYPVQARVEPEPRPGPSPRPTKAPSHLTLIRRKPRTNKTRRPNCNMWSFNPILCKTKKQRKKPEAQTGGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPASSPTFSGNIHSNSHRKVLEMRRRKETEESVSGLNRNQMAWSC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01126 300 Gene3D - 210 262 IPR013088 GO:0006355|GO:0008270
Vifa6g01126 300 ProSiteProfiles GATA-type zinc finger domain profile. 215 247 IPR000679 GO:0006355|GO:0043565
Vifa6g01126 300 MobiDBLite consensus disorder prediction 69 105 - -
Vifa6g01126 300 PIRSF Txn_fac_GATA_plant 13 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vifa6g01126 300 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vifa6g01126 300 SMART GATA_3 211 261 IPR000679 GO:0006355|GO:0043565
Vifa6g01126 300 FunFam GATA transcription factor 206 294 - -
Vifa6g01126 300 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Vifa6g01126 300 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vifa6g01126 300 MobiDBLite consensus disorder prediction 75 94 - -
Vifa6g01126 300 Coils Coil 59 79 - -
Vifa6g01126 300 PANTHER GATA TRANSCRIPTION FACTOR 29 292 - -
Vifa6g01126 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01126 Vifa-Chr6 365505127 365506139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01126 40 282 C2C2-Gata Transcription Factor Family AT4G36240 43.580 6.34e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa6g01126 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01126 - - gmx:100776188 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01126 6 365505127 365506139 Vifa6g01126 6 365505127 365506139 ECH
Vifa2g04754 2 1401832001 1401832996 Vifa6g01126 6 365505127 365506139 ECH