Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01097 ATGTCGCCGTCACCGTCGATATCCACCGGAAAAAGCAGTAAAATCCGCCGCATTGTGCGGCTGCGTCAAATGCTTCTCCGGTGGAGAAAGAAAGCTAGATTATCAACAACCTCCGATGTGCCGGAAGGACACGTGGCGGTTTGCGTGGGTCCTACGATGAGGAGGTTCGTCGTTCGCGCTAGCTACTTGAATCACCCGATCTTCAAGAAGCTTCTGATGCAGGCGGAGGAGGAGTACGGTTTTTGTAACGATGGACCGCTTGCTATACCGTGTGATGAGTTGGTTTTTGAAGAGCTTCTTCGGGTTATGGCCCGACCCGAACCGAGATTATCGATGATTGAGAATTTTCAGAAACGGTGCCACGTGGATGTGAGAAAGAGAAATAGTAGTAATAGTGGTTTTGAGTTTGTAGGAGAATCAAGTCCGTTGCTTCAGAATGATCTAATTTGCTGA 453 0.4857 MSPSPSISTGKSSKIRRIVRLRQMLLRWRKKARLSTTSDVPEGHVAVCVGPTMRRFVVRASYLNHPIFKKLLMQAEEEYGFCNDGPLAIPCDELVFEELLRVMARPEPRLSMIENFQKRCHVDVRKRNSSNSGFEFVGESSPLLQNDLIC 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01097 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 30 99 IPR003676 GO:0009733
Vifa6g01097 150 Pfam Auxin responsive protein 20 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01097 Vifa-Chr6 359747755 359748207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01097 10 144 Calmodulin-binding Proteins AT4G34750 47.651 1.83e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01097 K14488 - gmx:100795345 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01097 6 359747755 359748207 Vifa6g01097 6 359747755 359748207 ECH