Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01091 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTATGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTGGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATCTATTTCATTTCTTGTGCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATACATTCTAATCTTGTTCATTCTGCTGTCAAGGCTGGATTTAGGTACCATCATGCTGAGTCAGATTACTTGATGCTTGTATATTGGATCCCTCATACCCCTGATAGCATTCCTGCAAATGCTTCACACCGTCTCGGCATTGGTGCTTTTGTCGTCAATAACAAAAGAGAGGTGCTTGTGGTTCAGGAAACCAGTGGTAGATTTGGAGGCACAGGTGTATGGAAGATGCCTACTGGAGCTGTTAATGAAGGCGAGGATATTTGTGATGCTGTAATTAGAGAAGTGAAGGAAGAGACAGGGGTAGAGACAGAGTTTGTTGAAGTTTTAGCTTTCAGGCAAAGCCATAAATCTTTTTTTCAGAAATCAGACTTGTTCTTTGTTTGCATGTTGCAACCTCAATCCTTTGACATTCAAAGTCAGGCCTCAGAAATTGAAGCAACTAAGTGGATGCCTGTTGAAGACTATGCAGCCCAACCTTTTGTGCAAGAAAACGAGCACTTTGATTTTATTGCGAAAATATGCTTATCGAAGTTGAATGACAACTACACTGGTTTTTCTAACGTACCTACTACTACATCTTCTGGCAAAAAAACTTATCTGTATTTAAACAATGATGCTATTGGTAGCCACTTGTTAGCTTCCAAAGAGCAAGCTTAG 1587 0.3976 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFMPQQQKEDKRVNAAGKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLSISFLVQSRYYRSPEVLLGYQYTTAIDMWSFGCIHSNLVHSAVKAGFRYHHAESDYLMLVYWIPHTPDSIPANASHRLGIGAFVVNNKREVLVVQETSGRFGGTGVWKMPTGAVNEGEDICDAVIREVKEETGVETEFVEVLAFRQSHKSFFQKSDLFFVCMLQPQSFDIQSQASEIEATKWMPVEDYAAQPFVQENEHFDFIAKICLSKLNDNYTGFSNVPTTTSSGKKTYLYLNNDAIGSHLLASKEQA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01091 528 ProSiteProfiles Nudix hydrolase domain profile. 352 484 IPR000086 -
Vifa6g01091 528 Pfam Protein kinase domain 142 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01091 528 SMART serkin_6 142 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01091 528 Gene3D Transferase(Phosphotransferase) domain 1 222 354 - -
Vifa6g01091 528 MobiDBLite consensus disorder prediction 1 36 - -
Vifa6g01091 528 PANTHER NUDIX HYDROLASE RELATED 312 515 IPR003293 -
Vifa6g01091 528 FunFam Nudix hydrolase 8 354 492 - -
Vifa6g01091 528 SUPERFAMILY Protein kinase-like (PK-like) 136 328 IPR011009 -
Vifa6g01091 528 SUPERFAMILY Nudix 320 482 IPR015797 -
Vifa6g01091 528 CDD Nudix_Hydrolase_12 353 484 - -
Vifa6g01091 528 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Vifa6g01091 528 ProSitePatterns Nudix box signature. 389 410 IPR020084 GO:0016787
Vifa6g01091 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa6g01091 528 Pfam Nudix hydrolase domain 312 340 IPR040618 -
Vifa6g01091 528 ProSiteProfiles Protein kinase domain profile. 142 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01091 528 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 312 330 IPR003293 -
Vifa6g01091 528 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 334 350 IPR003293 -
Vifa6g01091 528 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 438 462 IPR003293 -
Vifa6g01091 528 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 350 368 IPR003293 -
Vifa6g01091 528 Gene3D Phosphorylase Kinase; domain 1 106 221 - -
Vifa6g01091 528 MobiDBLite consensus disorder prediction 7 36 - -
Vifa6g01091 528 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa6g01091 528 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 355 492 - -
Vifa6g01091 528 Pfam NUDIX domain 353 476 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01091 Vifa-Chr6 357081340 357086991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01091 283 353 EF-hand Containing Proteins AT5G22840 33.333 6.64e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa6g01091 Pkinase 2.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01091 K18670 - gmx:100786931 473.781