Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01089 ATGAATCTGTTGTTTGATGACAAAGGGGCCTTAGAGATTGCTGATCTATATAGGGTTCATTTACGTGTTGAAGTCTTTATTCAACACCCATTGTCACAGCCTCAGTATGTTGATGAGAGTGAAGTTATTTTAGATGAGATACCCCTGAATGTAATGGAAGATGATGCAGTTAGACAAAATGAGGTAAGTGAGGATGCTGTTGGACAGAAGGAGGCAAGTGAAGATGTTGTTATACAGAAGGAGGCAATTGAAGATGTTGTTGGACAGAAGGAGGCAAGTGAAGATGTTGTTATACAGAATGAGGCAAGTGAAGATGATGTTGGACAGAAGGAGGCAAGTGAAAATGCTGTTGGACAGAACGATGATGATAGTTCTGATGATGATAGCTCTGATGATAGTAGCTTTTCGTATGATAGTGCAAAGGAGGTTGTATTTGATGATGAAACTGATGACTGTGATACTGACTTGGAAGAGGAAGAAGGTATGGCAGAAGTAACTGATCTCTGTGAAACTGAACCAAATAAAGAAGATAGTAATGGAAGTGATAAAGGAAGTGATAAAGGAAGTGATAATGAAAGTGAGGATCTTGTAAGTGATTGTGATAGTGAAGATAGCAATACTACCAAGAGAAAGAAGTATCCCATTTTCAAGCTTCTAAAGGATATGTCCAATTACAAATGGGAAGTGGGTACATATTTTAGTACAAAAGAAGATATCAAGGAAGCAGTTACCTCTTATGCAGTCCAATCTGGCAGAAATTTAAAGTACATCAAAAATGACAAGATAAGGGTTAGGGTTAGGTGTAAGGAGGGATGTGAATGGGAAGGTTATTGGGCTAAGTTGGATGTTGAGGATACTTGGCAACTAAGAAAGGTGATAGACACCCATAGTTGTAGTAGAGAATATCATGTGAAGTTGTTGAAGACTAAATGGCTTAGCAAGAGGTTGCAGAATGCACTTAAAACCAACCCTAGATTGAAGCTTAAGGACATTAAGGAAAAGGTGCAGAGGAAGTGGAATGTGGGGGTCAACAAAACCAAGGCTATAAGGGCTAGGTTTGCAGCAAGAGACATGGTTGATGGGTCATTCTTAGGGGATTATACAAGGATTTATGACTATGCACATGAGTTGTTAAGATCTAACCCAGGGTCAACTGTGAAAGTACATGTCCAACCAGCTCAAGAAGGTAGTGGTGTTCAGAAATTACACTTCAAAAGGATTTACATATGCTTGGCAGCTTGTAAGGAAAGCTTCAGGTTAAGTAGACATTTCATAGGGCTTGATGGATGTTTTTTGAAAGGGCTTTGTGGAGGTCAAATCCTGTCAGCCATAGGCAGAGATCCCAATGATCAAATGCTACCAATAGCATATGCAGTAGTGGAGAGTGAAAACAAGGAAAGTTGGACATGGTTCTTGGAGCTGCTTATTGGTGATCTAGGTGGAAGAGAAGAGTGTCTCACATACACTTTTATTTCTGATCAACAAAAGGGATTATTGCCTGCAATGGAGGAACTGCTGCCTACAGTTGAACAAAGATTCTGTGTTAGGCATCTCTACAACAACTTTAGGAAGAGATTTCCAGGAAAAAAACTAAAGGAAATTATATGGAAGGCATCCAAATCAACTTACTACCAAGCTTGGGAAAGAGAGATGAAAGTTATGAAACATATCAATGGAGAAGCATACAAGCACATGATGTCTACCCCTCCAAGGTTTTGGAGCAGATCATACTTCAAGACTCATAACAAATGCGATGCAGTTCTCAATAATATGTCAGAATCCTTTAATAGTGTTATTTTGGAGTCAAGGGCCAAGCCATTAATAACCATGGTGGAAGAAATTAGGATATACATGATGGAGAGATGGGCTACAAACAGGATGAGGTTTCAGAAATTGACAGATGTAGAAGTGTTGCCAAACATTATGAAAAAGGTTGAGAAAACAAGTTCATTCACAAACATGTGGCTTCCCAGGATGTCTGATGAGCATATGTTTGAAGTGAGGCATCTGGAAAATTCTGCTGAAAAATTCACTGTAAACTTGAAGGAAAAAATATGTTCATGCAGAAGATGGGAGCTAACAGGCCTACCATGTGTTCATTCACTTGCAGCAATCAAGAATAGGAACCATAGGATTGATGAATACATTCCTGATTATTACAGGAAATCTAGATATTTGCAAGTGTACAAACCTGTCATATTCCCTGTTAATGGCTCAAACCTATGGGTTACAACTGAGTACCCTGATGTTATGCCACCCAAATTCAGGAAAATGCCTGGAAGGCCAAAGAAAAGGAGGAATTTAGAGCAAGGTGAGCTAGATGGTACTGATAAAAAGATGAGAAGAACAGGATTCATTATAAAGTGTAGCAGGTGTAAGCAGGTAGGTCACAACAAGCTTACTTGTAAGGTGCCTCCTACTAGTCAGACACATGTAGCTCAACCATCTGTACCACAAGCACCATCTGTACCACAAGCACCAGTGCCTTCTCAACCATCTCAAGCATCTGTACCAGTGCCTTCTCAACCATCTCAAGCATCTGTACCAGTGCCTTCTCAACCATCTCAAGCATCTGTACCAGTTCCTTCTCAACCATCTCAAGCATCTGTACCAGTTCCTTCTCAACCATCTCAAGCATCTGTACCAGTTCCTTCTCAACCATCTCAAGCATCTGTACCAGTGGCATCATATGTACCAGTGGCATCTGTACCAGTGGCATCTCAAGCATCTAAGTCAGTTCCTGGTCAAGGTTCTCAGGCATCTCAATCTAAATCATCCAAAAAGTTGTCAGTTAGAAGGCCAAATGCACCATTTGTCCCATCTCAAGCATCTAAGTCAGTTCCTGGTCAAGCTTCTCAGCCATCTCAATCTAAATCATCCAAAAAGTTGTCAGTTCGAAGGCCAAATGCACCATTTGTCCCACCAGGTCCAACAACGAGGTTAAAGGCATCAATAACTGTTGTAGGTCCAACAACAAGAAGGACAACACCAACTAAAAGAGCAGCACCAAAGTGGAAACCTTAG 3024 0.4051 MNLLFDDKGALEIADLYRVHLRVEVFIQHPLSQPQYVDESEVILDEIPLNVMEDDAVRQNEVSEDAVGQKEASEDVVIQKEAIEDVVGQKEASEDVVIQNEASEDDVGQKEASENAVGQNDDDSSDDDSSDDSSFSYDSAKEVVFDDETDDCDTDLEEEEGMAEVTDLCETEPNKEDSNGSDKGSDKGSDNESEDLVSDCDSEDSNTTKRKKYPIFKLLKDMSNYKWEVGTYFSTKEDIKEAVTSYAVQSGRNLKYIKNDKIRVRVRCKEGCEWEGYWAKLDVEDTWQLRKVIDTHSCSREYHVKLLKTKWLSKRLQNALKTNPRLKLKDIKEKVQRKWNVGVNKTKAIRARFAARDMVDGSFLGDYTRIYDYAHELLRSNPGSTVKVHVQPAQEGSGVQKLHFKRIYICLAACKESFRLSRHFIGLDGCFLKGLCGGQILSAIGRDPNDQMLPIAYAVVESENKESWTWFLELLIGDLGGREECLTYTFISDQQKGLLPAMEELLPTVEQRFCVRHLYNNFRKRFPGKKLKEIIWKASKSTYYQAWEREMKVMKHINGEAYKHMMSTPPRFWSRSYFKTHNKCDAVLNNMSESFNSVILESRAKPLITMVEEIRIYMMERWATNRMRFQKLTDVEVLPNIMKKVEKTSSFTNMWLPRMSDEHMFEVRHLENSAEKFTVNLKEKICSCRRWELTGLPCVHSLAAIKNRNHRIDEYIPDYYRKSRYLQVYKPVIFPVNGSNLWVTTEYPDVMPPKFRKMPGRPKKRRNLEQGELDGTDKKMRRTGFIIKCSRCKQVGHNKLTCKVPPTSQTHVAQPSVPQAPSVPQAPVPSQPSQASVPVPSQPSQASVPVPSQPSQASVPVPSQPSQASVPVPSQPSQASVPVPSQPSQASVPVASYVPVASVPVASQASKSVPGQGSQASQSKSSKKLSVRRPNAPFVPSQASKSVPGQASQPSQSKSSKKLSVRRPNAPFVPPGPTTRLKASITVVGPTTRRTTPTKRAAPKWKP 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01089 1007 ProSiteProfiles Zinc finger SWIM-type profile. 677 709 IPR007527 GO:0008270
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 88 207 - -
Vifa6g01089 1007 Pfam MuDR family transposase 225 275 IPR004332 -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 764 779 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 906 930 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 806 893 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 937 964 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 752 779 - -
Vifa6g01089 1007 PANTHER POLYPROTEIN, PUTATIVE-RELATED 286 766 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 984 998 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 906 1007 - -
Vifa6g01089 1007 SMART 26again6 684 711 IPR006564 GO:0008270
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 144 166 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 169 194 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 837 893 - -
Vifa6g01089 1007 MobiDBLite consensus disorder prediction 820 836 - -
Vifa6g01089 1007 Pfam SWIM zinc finger 678 705 IPR007527 GO:0008270
Vifa6g01089 1007 Pfam MULE transposase domain 425 521 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01089 Vifa-Chr6 356579902 356583136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01089 827 893 Trihelix Transcription Factor Family AT4G33970 41.791 4.43e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01089 - - ccaj:114914968 739.184