Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01084 ATGCTTTCACCAAAATACGCATCTACTTGGCTTCAATGGAAGGAAGCTCGATGGCCTGAATGTGCTTGGGCCTTGAAGACAGCCAAGGCTGTGAAGTCAGGTGGCCAAGTGATTAAGAAGAAAGCAAAGAAGATCAGAACAACTGTCACATTTCACCGGCCGAAGACTCTGCCGAAGGACAAAAACCCAAAGTATTATCGCATTAGTGCAACACCAAGAAACAAGTTGGACCAATATAAAATACTTAAATTTCCTCTAACTACCGAGTCGGCAATGAAGAAGATTGAAGATAAGAATATCCTTGTTTTTATTGTCGACCTGCGTGCTGACAAGAAGAAAATTAAAGACGTTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCTGATGGTACGAAGAAAGCCTATGTTCGGTTGACTCTAGATTATGATGCATTAGATTTTGCTAACAAAATCGGTATCATTTAA 486 0.4012 MLSPKYASTWLQWKEARWPECAWALKTAKAVKSGGQVIKKKAKKIRTTVTFHRPKTLPKDKNPKYYRISATPRNKLDQYKILKFPLTTESAMKKIEDKNILVFIVDLRADKKKIKDVVKKMYDIQAKKVNTLIRPDGTKKAYVRLTLDYDALDFANKIGII 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01084 161 ProSitePatterns Ribosomal protein L23 signature. 139 154 IPR001014 GO:0019843
Vifa6g01084 161 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 79 154 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa6g01084 161 Gene3D - 42 161 IPR012677 -
Vifa6g01084 161 Pfam Ribosomal protein L23, N-terminal domain 24 70 IPR005633 -
Vifa6g01084 161 Hamap 50S ribosomal protein L23 [rplW]. 81 161 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa6g01084 161 Pfam Ribosomal protein L23 81 141 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vifa6g01084 161 FunFam 60S ribosomal protein L23a 41 161 - -
Vifa6g01084 161 PANTHER 60S RIBOSOMAL PROTEIN L23A 23 161 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01084 Vifa-Chr6 356118657 356119366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01084 34 161 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 82.812 1.56e-59 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01084 K02893 - gmx:100777933 235.343