Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01082 ATGGGTTGTCTTCTGCTTCTAAGTATAATTCAACATGCGAAGCAAGAGTTACGACTACGGTCTCAACAGTGCTCAAAGTACCGTTTTTTAGGACAGGGTTCGAAGAAAATAGTTCATGTTCCTAGAGGACACTTTGCTGTGTATGTAGGTGATAAGGAAGATGAATATATGAGGCGGTTTGTGGTGCCAATATCTTACTTGAAGCAACCTATGTTTCAGGCCTTGTTGAGTCTTGCTGAGGAAGAGTTTGGTTTTGAACACCCAATGGGAAACATTGTTATTCCATGTCCTATTCGTTATTTTGTTACTCTCATTTCTTGTTTCAATGCCTCATAA 336 0.3958 MGCLLLLSIIQHAKQELRLRSQQCSKYRFLGQGSKKIVHVPRGHFAVYVGDKEDEYMRRFVVPISYLKQPMFQALLSLAEEEFGFEHPMGNIVIPCPIRYFVTLISCFNAS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01082 111 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 37 107 IPR003676 GO:0009733
Vifa6g01082 111 Pfam Auxin responsive protein 22 107 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01082 Vifa-Chr6 355295087 355295422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01082 39 108 Calmodulin-binding Proteins AT5G20810 45.714 1.16e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01082 K14488 - cam:101505472 147.902