Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01079 ATGTTTCTTTGGTGTTTTGGAGGCAGGGCTTATGATTCGGCAACTTCAGCAGGCGAGGGAACAGATCCGATAGAAGATACAGAAAGGTGGGAAGATAAAACCACTGATTGCTGCTTCATCATCAGCCTCATGATTTTGTATGCAAATATATGGAAGTCATCTTCAAATGCATATAGTCTCGTTTCATGTGCTTCCTTTGCTATCATGTCACTCAGTTTGTCACGGCGAACTCATTGCGGAGTTGAAATTGATCTTCTCTACTTCTTCCTCGGATGTCTAATTGTGCAGCTCATGAAGATTAGCTTGCAGTTACTCATTCTTGGAGCAGGTTTCAGCTACTCCCTTATTATTCTTCGTTCTTCACTCTCTTCAACAGATGATGGAATAGACAACGAGTATTTTGACCCGCAAGGTGAAAATTCACTTGTCCTTGAAATGGATTCATTACTACTGGAACAACTTAAAACTTGTATGAAGGGAATTGAAGAGGAGAATTTGAATCTCGTAGACAGGCTTCTGGAGCTCGTGAAGGAATACAATCTAGATAAGAGTGAATTACATTTACTCGGTAAGTCTGATTATGTAATGGATTCTCTGTCATCAAGAAATATCCATAATCTTAATGAAACAGTGAAGTTGATGGTAGCAGCTGGTTATAAGAAAGAGTGCTATGATGTGTATAGCAGTTGGCGCAAGGTATTCTTGAAGGTGTGTCTCAAAAGCGAAATATTTGGGTTGCCAATGGACAACATCAATTCCATCCATGAGTATGAAAGAGAGAAATATTTAGATATTATGTTTGATAGATGGATGACTGCTTTGGATGTAGCTATGATAATCTTGTTTCCCATTGAACAGAAACTCTGCAATCGTGTCTTCTTGGGGTTTTCCTTGGCAGCTTCTAGTTGCTTCTTTGAGGTTTGCAAAGAAGCAACGTCTCAGCTGCTGTGTTTTGCAGATACAATTGCTTCTGGGAGCCCTACGAAATGGCGTTTGTTCAAAATGCTTCAAATATTCGGGCATTTGGGTAATCATATTCCAAGATTCCAATCTCTTTTCTTGGATTCGACTTTACTGAACGAAGTAATCGCAGTTAGGAATAGATTAGGAGAAGCTAGCAGGGATCTTTTCATGGAAATGCATAATGTTATTTTCGGAGTTCCTGCAGCAAAGGAAACTGTTCTGACTCACGGTCTTCACCGAATTACTTTTGAGGTCATGAGCTACGTGTCTCTTGCTTGCATGTCGCGGAAAAAGTTGGAACAAATTTTACAAGCATACCCCAAGGTTGATAATCAAGTGGAAGCATCTTCTTTAATATATAAAATAAATAGCCTTTGA 1341 0.3937 MFLWCFGGRAYDSATSAGEGTDPIEDTERWEDKTTDCCFIISLMILYANIWKSSSNAYSLVSCASFAIMSLSLSRRTHCGVEIDLLYFFLGCLIVQLMKISLQLLILGAGFSYSLIILRSSLSSTDDGIDNEYFDPQGENSLVLEMDSLLLEQLKTCMKGIEEENLNLVDRLLELVKEYNLDKSELHLLGKSDYVMDSLSSRNIHNLNETVKLMVAAGYKKECYDVYSSWRKVFLKVCLKSEIFGLPMDNINSIHEYEREKYLDIMFDRWMTALDVAMIILFPIEQKLCNRVFLGFSLAASSCFFEVCKEATSQLLCFADTIASGSPTKWRLFKMLQIFGHLGNHIPRFQSLFLDSTLLNEVIAVRNRLGEASRDLFMEMHNVIFGVPAAKETVLTHGLHRITFEVMSYVSLACMSRKKLEQILQAYPKVDNQVEASSLIYKINSL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01079 446 Pfam Exo70 exocyst complex subunit 269 433 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa6g01079 446 Gene3D Exocyst complex component Exo70 138 445 - -
Vifa6g01079 446 Coils Coil 158 178 - -
Vifa6g01079 446 PANTHER EXOCYST COMPLEX PROTEIN EXO70 121 429 IPR004140 GO:0000145|GO:0006887
Vifa6g01079 446 SUPERFAMILY Cullin repeat-like 154 429 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01079 Vifa-Chr6 354701585 354704151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01079 193 425 EXO70 exocyst subunit family AT5G58430 44.915 5.54e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01079 - - mtr:11426486 308.916