Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01060 ATGGAGGACGGTGAACTTGATTTCTCGAATCAGGACGTTTTTCCGAATCCAACCATACCTGAATTTCCGAGTAGCGGTTCAATGGACAGTTTCTTTGATGAACTGTTGAAAGACACACACGCTTGTACTCACACCCACACGTGTAACCCTCCAGGTCCTGATTCTTCGCACACTCATACTTGTTATCATGTTCATACCAAAATTGTGCCTGCGTCTGAAGAGGATCAGGTTGGTACTGATGATACTGCTGAGTCGGCTGAGAAGAAGTCGAAGAAGCGGCCGGTGGGGAATAAAGAAGCTGTTCGGAAGTATCGTGAGAAGAAAAAGGCTAGGGCTGCGTCGTTGGAGGATGAGGTTACGAAATTGAGGGCTTTGAATCAGCATTTGATGAGGAAGTTGCAGGGGCAGGCTGCTCTGGAGGCTGAAGTGGCGAGGTTGAAGTGTTTGTTGGTTGATATTAGGGGGAGGATTGAAGGGGAAATTGGATCGTTTCCGTATCAGAAACCAACCAATGCTAACCCACCGATTCCGAATTTGCCTGGTTCTTATGTCATGAACCCTTGTAATGTGCAGTGTGATGATCGGGTATATTGCCATGGTCCTGGAGCAGATGAGAGGTTTGTTGCAGAAGGGGTGTCACCAAATGAGGAAGGATTTGATGGTTGTGAATTTGAAAGTCTTCAGTGTCTCGGAGGCCAGAATTTGGGGCTCAAAGATCTTCATGATTGTGGAGTTGGACCAAAAATGTCTAATATTAATTCCCAATCTTCCAATAAAAGAAAAGGGGGATCTCGTGCAGCAAAAGCTGGATGA 813 0.4613 MEDGELDFSNQDVFPNPTIPEFPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDSSHTHTCYHVHTKIVPASEEDQVGTDDTAESAEKKSKKRPVGNKEAVRKYREKKKARAASLEDEVTKLRALNQHLMRKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPTNANPPIPNLPGSYVMNPCNVQCDDRVYCHGPGADERFVAEGVSPNEEGFDGCEFESLQCLGGQNLGLKDLHDCGVGPKMSNINSQSSNKRKGGSRAAKAG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01060 270 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 165 IPR031106 GO:0003700|GO:0006351
Vifa6g01060 270 MobiDBLite consensus disorder prediction 72 109 - -
Vifa6g01060 270 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Vifa6g01060 270 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Vifa6g01060 270 MobiDBLite consensus disorder prediction 11 25 - -
Vifa6g01060 270 Coils Coil 98 132 - -
Vifa6g01060 270 Gene3D - 77 153 - -
Vifa6g01060 270 MobiDBLite consensus disorder prediction 248 262 - -
Vifa6g01060 270 MobiDBLite consensus disorder prediction 1 25 - -
Vifa6g01060 270 MobiDBLite consensus disorder prediction 248 270 - -
Vifa6g01060 270 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Vifa6g01060 270 CDD bZIP 91 144 - -
Vifa6g01060 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Vifa6g01060 270 MobiDBLite consensus disorder prediction 81 103 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01060 1 269 bZIP Transcription Factor Family AT4G35040 62.271 1.57e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g01060 bZIP_2 3.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01060 K25785 - gmx:780549 427.172