Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01059 ATGACAGTTGAAAAGAGGTTTGTTTTGGTTGGGATTAGAATTGATACTCAAAGCAGACAGCTTCTGAATTGGGCTCTTGTTAAAGTTGCTGAGCCTGGTGATTGTGTTCTTGCTGTTCATGTAGTGAAAACCAAAAGTTCAGATGATGTTTTGAAAAACAAGAGTATCATAGATGGGTATTTAGAGGTTTATGAAGGCTTGTGTGATGTCAAGAAGGTTGGTCTTTCTGCGAAAATCTTAACGGGGAGATCGATTCGAAACACTCTTGTTAGAGAAGCGAAAAACCATGGTGCTTTGGCTCTAGTGGTAGGGGGTAAGTCTGGCACTGCTAAATATTGCGCCAAACGACTTCCACCAACCACCAATGTTCTAGCCGTCCAAGATTCGAGGATTGTCTTTGGGAGGTGTAACAATAAACTACCACCAGGTAGTTTTATATTGGATCCAAGACCAATCATAGATAACCCGAGTGACAGAATAATCCAATCTGAATTTGGATGCGCCGTGGTGGAGAGTGAGAAATCACTACCCCAAAATACCAAGGAATCAAAAGAAGAAACATTTGACAATCCAGAAAAGCACAAGTCGCGGTCGATATCCATGTTTGCAGGTGATCCTTCTGAGCAGAAGCTTGGATGGCCTCTACTTTGCAAAACGAATTCAGAAATCTCACAAAGCTGTCATGGAAGGGACATGTCTGTAGTACAATGGGTAATGACTCTACCAGACCGTTCATCGGAAAGTAGTCCACAATCATCTTCCAGCGACAGAAATCCATTTGAAAGGAGCACCGGCGACATTCTTGAGGACGAGAGCTTCAACATTATTTTATCCCCATCTGTTGTACTACCAAAAGGCCTAGAGGAGATATTAAATGTCAATTCACTCAATTGCAAGTGGTTCTCCCTTGAGGCTCTTAAGTCTTGCACTGACCAATTTTCTTCAGAAAATTTGATTGGGAAAGGCGGGAGCAACCGTGTGTACAAAGGAGTTCTCTCTGATGGAAAGCTAATTGCAGTTAAAGTATTGCGGTCATCGAAAGAAGCCTGGAAAGATTTTTCCTTTGAGATGGAAATAATATCCCCATTGAAGCACAAAAACATTAGTCAACTACTTGGAATTTGCATAGAGGACAATAATACGTTGATATCCGTTTATGATTATTTCCCCAGAGGCAGCTTAGAAGAAAATCTACATGGAAAGAACAAAGATGGGTCAATTTTGTCATGGGAAGTGAGATTCAATGTAGCTGTTGGAATAGCTGAGGCCCTTGATTACCTACACACAGAAGCCTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCAAGACTTTGAACCACAATTGTCTGATTTTGGACTTGCAATATGGGGACCAACAAAAACACCCTTTTTGACACAAGAAGATGTAGTAGGAACATTTGGTTACCTTGCTCCTGAATACTTCATGTATGGAAAAGTCAGTGACAAGATAGATGTCTATGCTTTTGGTGTAGTACTACTTGAACTAATATCAAGTAGGGAGCCAATCAGTTCTGAACCTTGCAAAGGACAGGAGAGCTTGGTAGTCTGGGCAAAACCAATGATAGAGCGTGGGGATATTAAAGGTTTGTTGGACCCAAGATTAGAAGGGAAGTGTGATGAGACACAGTTGCAAAGAATGGTTTTAGCAGCATCTTTATGCATCACGCAGGCTGCTAGAATTCGTCCTAAGTTTAATCAGATACTGAAGATCCTAAAAGAGGGTGATGAAGTTGAATATTGCTTCAATGAGCATTCAGAAAATGAAGAAAACATTGATGACGAAGTATATCCAAATTCAAGTGCAGAGTTACACCTAACACTTGCATTACTTGGTGTTGATGAAGACAATACATCATCATGTAGTAGTACAGAGCACAGATATAGTGAGAATTTGAAAGACCAATGGAGCAGCAGGTCTTCAAGTTTTAACTAG 1974 0.4058 MTVEKRFVLVGIRIDTQSRQLLNWALVKVAEPGDCVLAVHVVKTKSSDDVLKNKSIIDGYLEVYEGLCDVKKVGLSAKILTGRSIRNTLVREAKNHGALALVVGGKSGTAKYCAKRLPPTTNVLAVQDSRIVFGRCNNKLPPGSFILDPRPIIDNPSDRIIQSEFGCAVVESEKSLPQNTKESKEETFDNPEKHKSRSISMFAGDPSEQKLGWPLLCKTNSEISQSCHGRDMSVVQWVMTLPDRSSESSPQSSSSDRNPFERSTGDILEDESFNIILSPSVVLPKGLEEILNVNSLNCKWFSLEALKSCTDQFSSENLIGKGGSNRVYKGVLSDGKLIAVKVLRSSKEAWKDFSFEMEIISPLKHKNISQLLGICIEDNNTLISVYDYFPRGSLEENLHGKNKDGSILSWEVRFNVAVGIAEALDYLHTEALKPVIHRDVKSSNILLSQDFEPQLSDFGLAIWGPTKTPFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISSREPISSEPCKGQESLVVWAKPMIERGDIKGLLDPRLEGKCDETQLQRMVLAASLCITQAARIRPKFNQILKILKEGDEVEYCFNEHSENEENIDDEVYPNSSAELHLTLALLGVDEDNTSSCSSTEHRYSENLKDQWSSRSSSFN 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01059 657 MobiDBLite consensus disorder prediction 242 263 - -
Vifa6g01059 657 ProSiteProfiles Protein kinase domain profile. 313 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01059 657 FunFam Putative receptor-like serine/threonine-protein kinase 389 602 - -
Vifa6g01059 657 Pfam Protein kinase domain 314 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01059 657 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 282 388 - -
Vifa6g01059 657 MobiDBLite consensus disorder prediction 177 199 - -
Vifa6g01059 657 Gene3D Transferase(Phosphotransferase) domain 1 389 601 - -
Vifa6g01059 657 SUPERFAMILY Protein kinase-like (PK-like) 294 585 IPR011009 -
Vifa6g01059 657 MobiDBLite consensus disorder prediction 242 261 - -
Vifa6g01059 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vifa6g01059 657 CDD USP_Like 8 126 - -
Vifa6g01059 657 MobiDBLite consensus disorder prediction 173 199 - -
Vifa6g01059 657 Gene3D Phosphorylase Kinase; domain 1 285 388 - -
Vifa6g01059 657 SMART serkin_6 313 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01059 657 PANTHER OS08G0249100 PROTEIN 172 616 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01059 Vifa-Chr6 351061163 351064576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01059 301 589 Trihelix Transcription Factor Family AT1G70460 44.932 5.46e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa6g01059 Pkinase 2.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01059 - - tpra:123913065 1053.12