Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01050 ATGGCGTTGCCGGTGGTGGTTGACGCAGAATACCTCAAGCAGATCGAAAAAGCTCGCCGCGATCTCCGAGCACTCATCGCCAACAGAAACTGCGCTCCTCTCATGCTCCGCTTAGCTTGGCACGATGCGGGAACTTACGACGCCATCTCGAAGACCGGTGGACCTAACGGCTCTATCCGGAACGAGGAAGAGTATTCTCATGGCGCTAACAATGGTTTGAAGAAAGCTATTGATTTCTGTGAGGAAGTGAAGGCAAAGCATCCTAGAATCTCATATGCAGACCTTTATCAGCTTGCCGGTGTTGTTGCAGTTGAGGTTACTGGGGGTCCCACAGTCAACTTTGTTCCCGGAAGAAGGGATTCAAAAATATGTACCAGAGACGGGCGGCTTCCCGATGCTAAAAAAGGTGAGTCGCATCTCCGTGATATCTTTTATCGTATGGGCTTGACTGACAAGGATATTGTTGCGCTGTCTGGGGCACATACACTGGGAAGAGCACATCCAGAGAGATCAGGGTTTGATGGCGCTTGGACAGAGGACCCTCTGAAATTTGATAACTCATACTTTGAGATACTTTTGGAAGAAGATTCTGCAGGGCTGCTTAAACTTCCAACGGACAGGGCTTTAGTGGATGATCCTGAATTTCGCCGTTATGTTGAGCTCTATGCGAAGGACGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTTGGCTTTGTGCCAAGCTCAAAGGCGAATGCTCCTAAGGATGCGACCATTCTGGCACAAAGTGCTGTTGGAGTTGTAGTTGCTGCTGCAGCGGTCATCCTCAGTTACTTGTATGAACATTCCAGAAGAGGGAAGTAG 864 0.485 MALPVVVDAEYLKQIEKARRDLRALIANRNCAPLMLRLAWHDAGTYDAISKTGGPNGSIRNEEEYSHGANNGLKKAIDFCEEVKAKHPRISYADLYQLAGVVAVEVTGGPTVNFVPGRRDSKICTRDGRLPDAKKGESHLRDIFYRMGLTDKDIVALSGAHTLGRAHPERSGFDGAWTEDPLKFDNSYFEILLEEDSAGLLKLPTDRALVDDPEFRRYVELYAKDEDAFFRDYAESHKKLSELGFVPSSKANAPKDATILAQSAVGVVVAAAAVILSYLYEHSRRGK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01050 287 ProSitePatterns Peroxidases proximal heme-ligand signature. 153 163 IPR019793 -
Vifa6g01050 287 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 7 250 IPR044831 GO:0004601|GO:0034599
Vifa6g01050 287 ProSiteProfiles Plant heme peroxidase family profile. 32 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 FunFam Cytosolic ascorbate peroxidase 18 137 - -
Vifa6g01050 287 Coils Coil 8 28 - -
Vifa6g01050 287 Gene3D Peroxidase, domain 2 131 237 - -
Vifa6g01050 287 ProSitePatterns Peroxidases active site signature. 32 43 IPR019794 GO:0004601
Vifa6g01050 287 Gene3D - 18 244 - -
Vifa6g01050 287 CDD ascorbate_peroxidase 4 245 - -
Vifa6g01050 287 Pfam Peroxidase 19 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 SUPERFAMILY Heme-dependent peroxidases 19 249 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 32 47 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 129 146 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 50 60 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 169 193 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 89 107 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 64 88 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 147 168 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 11 31 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 108 120 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Plant ascorbate peroxidase signature 221 245 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Haem peroxidase superfamily signature 90 107 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Haem peroxidase superfamily signature 32 46 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Haem peroxidase superfamily signature 153 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 PRINTS Haem peroxidase superfamily signature 108 120 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa6g01050 287 FunFam L-ascorbate peroxidase, cytosolic 131 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01050 Vifa-Chr6 348574257 348578235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01050 90 244 Peroxidase AT4G17690 34.211 2.36e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01050 K00434 - gmx:100170727 494.582