Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01049 ATGGGAAGATCACCTTGTTGTGAAAAAGCTCATACTAACAAAGGTGCTTGGACTAAAGAAGAAGATGATAGATTAATCTCTTATATTCGTGCTCATGGTGAAGGCTGCTGGAGATCTCTTCCTAAAGCTGCTGGCTTACTCCGCTGCGGCAAAAGCTGTCGCCTCCGCTGGATTAATTATCTCCGCCCGGACCTTAAGCGTGGCAACTTCACTGAAGAAGAAGACGAACTTATTATCAAACTTCATAGTCTTCTTGGTAACAAATGGTCTTTGATAGCCGGAAGATTACCCGGTAGAACAGATAATGAAATAAAGAATTATTGGAATACTCATATCAGAAGAAAGCTTCTGAATAGAGGAATTGATCCCGCTACTCATAGACCTCTAAACGAAGTTTCTCAATCTCATTCTCAAGTTCTTCATCTTCAGAATCAGAATCAGAATCATAACCAGAATCAAGAAGGTGTAACTATAGCTGTAGCTGCTTCTGCCTCAACTACTACCACTTCTACAGTTATAGCCGCGGCCTCACCCGCACCCGCATCAATTATATCTTTTGCTCCGTCTATTAAACAAGAACAATATCATAACCATTATCACAGTTATAGTCATAATCATCAAGAGATGATGATTAAAGGGTCGGTGTTAGAACGGTGTCCTGATTTGAATCTTGAGTTAACAATAAGTCCTCCACGGCAACAAGAATCCGACGAACAATTCAAAAACAGAGACAGAAACAGCAACATCAACAACAGTAGCCTCTGTTTCGTTTGTAGTTTGGGTTTACAGAACAGTAAAGATTGCAGCTGTGAAGAAATTGTTGGAAATTCAAACGGTGGAAAAGCACCTGCTTATGATTTCTTGGGTTTGAAAGCTGGTGTTTGGGATTACAAAGGCTTAGAAATGAAATGA 912 0.4013 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEVSQSHSQVLHLQNQNQNHNQNQEGVTIAVAASASTTTTSTVIAAASPAPASIISFAPSIKQEQYHNHYHSYSHNHQEMMIKGSVLERCPDLNLELTISPPRQQESDEQFKNRDRNSNINNSSLCFVCSLGLQNSKDCSCEEIVGNSNGGKAPAYDFLGLKAGVWDYKGLEMK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01049 303 CDD SANT 69 112 IPR001005 -
Vifa6g01049 303 FunFam MYB-related transcription factor 13 66 - -
Vifa6g01049 303 CDD SANT 16 61 IPR001005 -
Vifa6g01049 303 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vifa6g01049 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g01049 303 SMART sant 66 114 IPR001005 -
Vifa6g01049 303 SMART sant 13 63 IPR001005 -
Vifa6g01049 303 Gene3D - 68 156 - -
Vifa6g01049 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g01049 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g01049 303 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vifa6g01049 303 FunFam Myb transcription factor 68 137 - -
Vifa6g01049 303 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 233 - -
Vifa6g01049 303 Gene3D - 14 66 - -
Vifa6g01049 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g01049 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01049 Vifa-Chr6 348569112 348570114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01049 1 303 MYB Transcription Factor Family AT4G38620 53.822 7.47e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g01049 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01049 K09422 - pop:7453642 359.762