Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01041 ATGCGCAGAGAGATCGCGTTTCTCGCACAGCCCCGATTCCTCCTCCTCTTCTTAGTTCTCTCAGTTTTCCTCATTTTCGCATTCTCTGCTTCTAAATGGGCTGGCGAGGAAACAGAAGAGGAGCCCGAAATTACGCATAGAGTTTACTTGGATATTGATATTGATAAACAGCATTTAGGCAGGATTGTGATTGGATTATATGGCCAAGTGGTACCAAAAACTGTGGAAAATTTTAGAGCCTTGTGCACAGGGGAGAAAGGCGAGAGTGCAAGTGGTGTAAAACTTCATTACAAAGGAACACCGTTTCATCGAATAGTATCTGGTTTTGTGATTCAAGGTGGGGATATTGTTCATCATGATGGAAAATCATCCGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAGAATCAAACATTCTCATGCTGGTGTTGTCTCTATGGCTAATACCGGACCTGATTCCAACGGTTCACAGTTTTTCTTTACCTCAGTGAAGGCCAGTTGGTTGGATGGAGACCATGTTGTTTTTGGCAAGGTTGTTCGAGGCATGGATAACGTGTTTGCAATTGAAGGCGGGGCTGGAACCTATAATGGAAAACCCAGAAAGAAGGTAGTGATTGCAGATTCCGGAGAGATACCGAAAAGTGAGTGGGATGAGGAAACTTGA 672 0.436 MRREIAFLAQPRFLLLFLVLSVFLIFAFSASKWAGEETEEEPEITHRVYLDIDIDKQHLGRIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHHDGKSSESIYGGTFPDENFRIKHSHAGVVSMANTGPDSNGSQFFFTSVKASWLDGDHVVFGKVVRGMDNVFAIEGGAGTYNGKPRKKVVIADSGEIPKSEWDEET 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01041 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 FunFam Peptidyl-prolyl cis-trans isomerase 34 220 - -
Vifa6g01041 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 47 214 - -
Vifa6g01041 223 SUPERFAMILY Cyclophilin-like 44 214 IPR029000 -
Vifa6g01041 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 Gene3D - 34 220 IPR029000 -
Vifa6g01041 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Vifa6g01041 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Vifa6g01041 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01041 Vifa-Chr6 342238237 342241035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01041 60 211 U-box Gene Family AT5G67530 40.523 3.54e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01041 - - gmx:100800775 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01041 6 342238237 342241035 Vifa6g01041 6 342238237 342241035 ECH