Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01040 ATGGGCATCCTCTCCGATTCTTCTTCCGCTTCTACCGCCACAAAATGGCTCGGTTTTGTAGCCGCCGTTTGGATTCAAGCCATCTCCGGCAACAATTACACATTCTCAAACTACTCCGACGCTCTCAAATCCCTCATGCACCTCACTCAATTACAGCTCAACAATCTCTCCGTCGCTAAAGACGTCGGTAAAGCCTTCGGTCTCCTCGCCGGACTTGCCTCCGACCGTTTACCTACCTGGGCCATTCTCCTCATTGGTTCCTTCGAAGGTCTCATCGGTTACGGCGTTCAATGGCTCGTTGTAGCTCAAATCATCCAACCTCTTCCCTACTGGCAGATGTGTGTGTTTCTTTGCATGGGAGGAAATAGCACAACATGGATGAACACTGCGGTTCTAGTTACGTGCATAAGAAACTTCCGGCGAAACAGAGGACCAGTTTCAGGGATTCTGAAAGGCTATGTAGGTTTAAGCACAGCGATTTTCACAAATCTTTGTTCTGCGATTTTCGCAGAGGACCCTGCTTTTTTTCTTCTCACACTTGCTATTGTTCCCTTTATCGTTTGTCTCACCGGAGTCTTTTTCCTCCGTGAAATACCCGTTGCTAAAACAACCACCGCAGAAGAAGACAGTGAAGAAAGTAAATACTTCGGAATCTTGAACGCCGTCGCCGTTGTTCTCGCTGTTTATCTCTTAGCTTATGGTTTTGTACCTAACGTCAACACGCTGGTGTCGAAGGTTTTCATCGCTATTTTGCTTGTTCTCTTGGCGTCACCGTTGGGGATTCCGGTTTATGCTTATTTCAAGGGAAGGAATTCGGGTCGGGTCGGAGGTGATATTGAGGGTAACCGAGTAAGAGAACCGTTGATTCAAAATGGTGATAAAGAAAACGAAACGGTGACAGTTGAGACGGTTGAGACGGAGACAGAGGCGGTTGTCGTGGTGAAAGGACAACCGGCGGTGGGGGAGGAACATACAATAATGGAAGTGATGAAAAGTTTGGATTTTTGGATCTTGTTTGTTTCGTTTCTATGTGGAGTTGGAACGGGTTTGGCAGTTATGAATAATATGGGTCAAATCGGGTTGGCTCTCGGGTATACGGATGTATCCATATTCGTTTCATTGACTAGCATTTGGGGATTTTTTGGAAGGATCATATCTGGTTCTGTTTCTGAACATTTTATCAAGAAATCTGCAACGCCTAGACCTCTTTGGAATGCAATATCTCAAATTCTGATGGCTGTAGGTTACATACTCCTAGCCTTGGCTATGCCCGGTTCACTTTACATCGGTTCTATTATCGTCGGCATATGTTACGGTGTACGCTTAGCTGTTACTGTCCCAACAGCTTCCGAGTTATTTGGACTCAAATACTACGGCTTAATCTACAATATTCTCATCCTCAACCTTCCTCTCGGCTCTTTCCTCTTCTCCGGGCTACTAGCTGGCATACTCTATGATATGGAGGCAACAACGACCCAAGGAGGCGGTAACACATGCGTGGGAGGTCATTGTTATAGACTGGTCTTTATAGTCATGGCTGGAGCATGTGTTGTTGGGTTTTTCTTAGACATTCTCCTGGCACTTAGAACCAAGACTGTTTACAACAAGATTTGCATGAGTAAGAGATCAAAGAAATCCTCAGGAACATCATCAAGTAGCTAA 1662 0.4555 MGILSDSSSASTATKWLGFVAAVWIQAISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLAGLASDRLPTWAILLIGSFEGLIGYGVQWLVVAQIIQPLPYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTNLCSAIFAEDPAFFLLTLAIVPFIVCLTGVFFLREIPVAKTTTAEEDSEESKYFGILNAVAVVLAVYLLAYGFVPNVNTLVSKVFIAILLVLLASPLGIPVYAYFKGRNSGRVGGDIEGNRVREPLIQNGDKENETVTVETVETETEAVVVVKGQPAVGEEHTIMEVMKSLDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYTDVSIFVSLTSIWGFFGRIISGSVSEHFIKKSATPRPLWNAISQILMAVGYILLALAMPGSLYIGSIIVGICYGVRLAVTVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTQGGGNTCVGGHCYRLVFIVMAGACVVGFFLDILLALRTKTVYNKICMSKRSKKSSGTSSSS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01040 553 Pfam Nodulin-like 15 263 IPR010658 -
Vifa6g01040 553 Gene3D MFS general substrate transporter like domains 12 209 IPR036259 -
Vifa6g01040 553 Gene3D MFS general substrate transporter like domains 329 533 IPR036259 -
Vifa6g01040 553 SUPERFAMILY MFS general substrate transporter 33 531 IPR036259 -
Vifa6g01040 553 CDD MFS_Mch1p_like 15 519 - -
Vifa6g01040 553 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 16 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01040 Vifa-Chr6 341538863 341541622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01040 13 548 Nodulin-like Gene Family AT4G34950 69.784 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01040 - - gmx:100800237 809.675