Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01031 ATGAGTTCTAGGTTATCTGGGAAGGTGAAGTGGTTCAACGATCAGAAGGGGTTTGGATTCATTACCCCTGATGATGGTACCGAGGAGCTTTTCGTTCACCAATCTCAGATCCAGACTGATGGTTTCCGGAGCCTTGCTGAGGGTGAATCTGTTGAGTATCAGGTTGAATCTGACTCCGATGGACGATCCAAGGCTGTGCAGGTGACTGGTCCCGATGGCGCGTCTGTGCAGGGAAGCAAGCGTGGCGGTTACAACAGTGGCGGTGGAGGTGGTTATGGTGGACGAGGAGGAGGACGCGGTGGAGGCGGCGGCGGTGGTGGTGGCGGTGGAAGCTGCTACAGCTGTGGGGAGTCTGGTCATTTTGCTAGAGATTGCCCTACCAGTACCCGTTAG 393 0.5547 MSSRLSGKVKWFNDQKGFGFITPDDGTEELFVHQSQIQTDGFRSLAEGESVEYQVESDSDGRSKAVQVTGPDGASVQGSKRGGYNSGGGGGYGGRGGGRGGGGGGGGGGGSCYSCGESGHFARDCPTSTR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01031 130 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Vifa6g01031 130 Gene3D - 107 130 - -
Vifa6g01031 130 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Vifa6g01031 130 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Vifa6g01031 130 Gene3D - 1 82 IPR012340 -
Vifa6g01031 130 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 127 - -
Vifa6g01031 130 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Vifa6g01031 130 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Vifa6g01031 130 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Vifa6g01031 130 ProSiteProfiles Zinc finger CCHC-type profile. 112 126 IPR001878 GO:0003676|GO:0008270
Vifa6g01031 130 MobiDBLite consensus disorder prediction 60 82 - -
Vifa6g01031 130 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Vifa6g01031 130 SUPERFAMILY Retrovirus zinc finger-like domains 92 128 IPR036875 GO:0003676|GO:0008270
Vifa6g01031 130 Pfam Zinc knuckle 111 126 IPR001878 GO:0003676|GO:0008270
Vifa6g01031 130 SMART c2hcfinal6 111 127 IPR001878 GO:0003676|GO:0008270
Vifa6g01031 130 MobiDBLite consensus disorder prediction 49 110 - -
Vifa6g01031 130 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Vifa6g01031 130 SMART csp_8 6 71 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01031 Vifa-Chr6 338331709 338332314 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vifa6g01031 CSD 3.4e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01031 - - lang:109325901 156.377