Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01030 ATGGGAAAGTTGTGGTGTGTAGTGCTCACATTTGTTATGCTATTCCTTCCTGTATTAGTCTTACCAGAAGGGTCCCACACAACCATTTACATGATTTGTATATTGGTATTCATTGTGTTGTGTATATTTGTAAATTTCTTTAGATCATTTAAAAAAGTGGACAATTTCGAAGAAAGCATTCAGATACAAATTCTCCAAGAACGGAGAGAATTTCATGCTAATCGAAATGCTGGTTGGTCTACACGGGTTATACCGAATTCGCAGATTAATGCGTCATTTGGTACAATTGCGCAGATGGCTAGGTGGGCGATAAGAGCATTGCCTCCGGTTAAAAGTTTTGGCGGAGAGGAAGGTAAGGATTGTCCAATCTGCATGGAAGAGTTTGAGAAAGGAATGTTGATTCAATCTTTTGGTGTATGTGGACATGAATATCATACATCATGTCTCAATTCGTGGTTACTAGGAGGAAAAACTACTTGTCCGGTTTGTCGCCAAGATCTGTCGGGCTCGGCTTCGTCCGCGGGGTCTGTCTAA 534 0.4101 MGKLWCVVLTFVMLFLPVLVLPEGSHTTIYMICILVFIVLCIFVNFFRSFKKVDNFEESIQIQILQERREFHANRNAGWSTRVIPNSQINASFGTIAQMARWAIRALPPVKSFGGEEGKDCPICMEEFEKGMLIQSFGVCGHEYHTSCLNSWLLGGKTTCPVCRQDLSGSASSAGSV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01030 177 Pfam Ring finger domain 120 164 IPR001841 -
Vifa6g01030 177 SUPERFAMILY RING/U-box 115 168 - -
Vifa6g01030 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 171 IPR013083 -
Vifa6g01030 177 ProSiteProfiles Zinc finger RING-type profile. 121 164 IPR001841 -
Vifa6g01030 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 166 IPR044675 -
Vifa6g01030 177 SMART ring_2 121 163 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01030 87 167 C3H Transcription Factor Family AT3G10910 33.333 9.40e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01030 - - psat:127103372 211.846