Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01026 ATGGCAGATAGCGTGGTTACGTTCCTTTTGGGACACTTATCCCAATTGCTGCAAAACGAAGTCAATTTGCTGGGTGGATTGAAAGGAAAAATCGAATCCCTCGTTTATGAACTCCAAATGATAAACGATTATCTAAAAAATTCTTCTGAAGGGATCAACAACAACAACAATCAGACTTATCTGAGTCAGATCAGAAATGTTTCCTACTTAGCCAAGGATGTTATCGACACATTCATCACCAATGTCGCCTTCTACAAGAACAGAAATGTGCTGGGAAGAATGTTTCACAGCTTTAAGCACGCTAAGTTGCTACACCACGCAGCAGAGGAAATTGACAAGATCAAAACAACGCTCAACGAGATACACGAAAACAAGATCAAATACTGTCAAGAAAGCATTGATCAATCAACATCAGCAAGACAAGAGGAGGAGAGAAGGCAATCAGTCCACAGATTAAGAAGAGACGTGGAGGAGGAAAATGTTGTGGGCTTTGTCCATGAATCCGAGGTAGTCATCAATAGCCTCAGAGAGGCTGGTTCACCGCCACTCAAAGTTTTTTCAATCATTGGTATGGGTGGATTGGGCAAAACCACCCTGGCACGAAAAGTCTACAACAGTGATGAGGTAAAGAAACACTTCAATTGTCGCGCATGGGCTTATGCGTCAAGCGAATGTAGGGCCAGAGAGCTTTTGGTTGATCTTCTTCAAAAATTGATGTCAAAAAATTATTATGAACGTAGAAGCAGCACCACCAAAAAGGATAAGAAGAAACAAAAGGAAGCTGTGAATCAAGACATCTCTAGCTTAAGTGATGATGAGCTGAAGAAAAGAGTACGGGAATGCTTGGAGGGGGAGAAGTATCTGCTGGTTCTAGATGACTTGTGGAAAATACAAGATTGGGATGAGGTAAAAGATGCTTTTCCGAATGAAAATGAAGGAAGCAGAATACTGATAACCAGTCGTTTGAAAGAAGTTGCCTCGCATACCGGTCGAGATCCTCCTTACTATCTTCAATTTCTCAGTGAAGAACAAAGTTGGGAGCTATTTTCCAAAAAAGTCTTTAGAGGAGAACAACACCCTAGTGATCTTGAGTCTCTAGGTAAACAAATTGTTAAAAGTTGTGGCGGTTTGCCACTCTCAATTGTGGTTCTCGGAGGACTTCTGGCAAATAAGGAAAAGTCGCACAGAGAATGGTCCAAAGTGTTGGGTCATGTTAATTGGTATCTTACCCGAGACGAGACTCAAGTAAAGGATATAGTACTTAAACTCAGTTTCGATAACTTGCCAGCAAGACTGAAACCATGTTTTCTGTATTTAGGGATATTCCCTGAAGATTCTGAAATACGTGTAAGAAAATTGTTGCAACTATGGATGACTGAAGGATTTATACAAGAAACAGGAAGTCGAGATGCATGTGATGTTGCTGATGACTACTTGTATGAGCTCATTGATCGCAGTTTGATCCAAGTAGCACGGGTGAAAGGTAGTGGAGGCGTGAAAACATGCCGCATCCATGATCTTCTCAGAGATATGTGCATATTAGAGAGCAAAGAAGATAACTCCTTTCAGGTTTGCACTGATAACAACATTTTAATCTCTACAAAACCTCGTAGATTGTCTGTCCATTCTAGCATATCTAACTATGTTTCTTCAAACACTAATGATCATTCATGTGTTCGGTCTTTGTTTTGGTCTGGCCCAAATTATTTCGTTTCTCATGACGAATGGAAATGGCTTACCAAAAGCTTCAAATTGGTCCGGGTGTTAGATCTTGAAGCATCCCCACGTTGGTATGATTATTTTAATTCTTATAAGATTCCTGCAAATTTAGGGAACTTCATTCACTTGCGGTACTTAAGAATAGATTCACATAATTTTAGAAGTGTTCCAGATTCTATATGTAACCTTCAGAATCTACAAACATTAGACTTGGGACCTTCAACCAGGAACTACACAATTTCTTTCCCCTGTGGAATATCAAAGCTCAAGCATCTAAGGCATGTGTATACTTTTGGACCTATCATGCTACGTGGTCGTTATTTAGAATCAAATGGTAATGTTATGTGGAATCTTCAAACACTCTCTTGCATCGTGCTTGATCAAAAAACAACATATCTGATAGAGAAAGGATGTTTCCCCAAACTAAGAAAATTAGGATTGCATATCTCCTCAAAATTCAAGGGTGATGTGCCCAAAATGTTGCTGAGCCTACAAAAGTTGAAACATTTGAATAAGCTAGAAATCCTATTCTACGTGCATGATAATACAGATCCGCGATGGGATTTCAATTATAAGCCCGAGGAAATTTTAGAAAGTTTGAAGCACTTGAGCCATCTGAGTATACTGAAAATTATCAATGCATGTGAGCTTCTAACATGTGTGACCATGTTTCCTCCCAACATTACCAAGTTAACATTGATAAATAGTACTCGTGCGAATGAAGGTGGGATGAATGCTATTGGAAATCTCACCAAACTCCAAAGTTTGATATTAACTGGAGACTACTATACGTGTTCAATTTTTGATCTTAATTGTATTGAAGATGGGTTCCCACAACTGCAAGAGTTTCATATGAAAAACTTAACTATCCGAAACTGGAAATTAGCTAATGGTTCGATGCCACACCTTCACATCCTTGATATTCGTAAATGCCTTGAGTTGGATAGCCTCCCAAGTGAACTTTTGACTACCTTAACAAAAGTATATATAAGGAGACCCTCCCGGAAAATACGCACAATGCTACCCAATTTGGAAGTTAAGAATGGATGTGAAATCATTGTAGAGGAATGGACTTAA 2796 0.3923 MADSVVTFLLGHLSQLLQNEVNLLGGLKGKIESLVYELQMINDYLKNSSEGINNNNNQTYLSQIRNVSYLAKDVIDTFITNVAFYKNRNVLGRMFHSFKHAKLLHHAAEEIDKIKTTLNEIHENKIKYCQESIDQSTSARQEEERRQSVHRLRRDVEEENVVGFVHESEVVINSLREAGSPPLKVFSIIGMGGLGKTTLARKVYNSDEVKKHFNCRAWAYASSECRARELLVDLLQKLMSKNYYERRSSTTKKDKKKQKEAVNQDISSLSDDELKKRVRECLEGEKYLLVLDDLWKIQDWDEVKDAFPNENEGSRILITSRLKEVASHTGRDPPYYLQFLSEEQSWELFSKKVFRGEQHPSDLESLGKQIVKSCGGLPLSIVVLGGLLANKEKSHREWSKVLGHVNWYLTRDETQVKDIVLKLSFDNLPARLKPCFLYLGIFPEDSEIRVRKLLQLWMTEGFIQETGSRDACDVADDYLYELIDRSLIQVARVKGSGGVKTCRIHDLLRDMCILESKEDNSFQVCTDNNILISTKPRRLSVHSSISNYVSSNTNDHSCVRSLFWSGPNYFVSHDEWKWLTKSFKLVRVLDLEASPRWYDYFNSYKIPANLGNFIHLRYLRIDSHNFRSVPDSICNLQNLQTLDLGPSTRNYTISFPCGISKLKHLRHVYTFGPIMLRGRYLESNGNVMWNLQTLSCIVLDQKTTYLIEKGCFPKLRKLGLHISSKFKGDVPKMLLSLQKLKHLNKLEILFYVHDNTDPRWDFNYKPEEILESLKHLSHLSILKIINACELLTCVTMFPPNITKLTLINSTRANEGGMNAIGNLTKLQSLILTGDYYTCSIFDLNCIEDGFPQLQEFHMKNLTIRNWKLANGSMPHLHILDIRKCLELDSLPSELLTTLTKVYIRRPSRKIRTMLPNLEVKNGCEIIVEEWT 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01026 931 Gene3D Ribonuclease Inhibitor 525 924 IPR032675 -
Vifa6g01026 931 FunFam Probable disease resistance protein At1g61300 143 334 - -
Vifa6g01026 931 CDD RX-CC_like 2 121 IPR038005 -
Vifa6g01026 931 SUPERFAMILY L domain-like 496 904 - -
Vifa6g01026 931 Gene3D - 425 514 IPR036388 -
Vifa6g01026 931 Pfam Rx N-terminal domain 5 82 IPR041118 -
Vifa6g01026 931 PRINTS Disease resistance protein signature 871 887 - -
Vifa6g01026 931 PRINTS Disease resistance protein signature 185 200 - -
Vifa6g01026 931 PRINTS Disease resistance protein signature 374 388 - -
Vifa6g01026 931 Gene3D - 140 332 IPR027417 -
Vifa6g01026 931 Coils Coil 104 124 - -
Vifa6g01026 931 Gene3D - 339 424 IPR042197 -
Vifa6g01026 931 FunFam Probable disease resistance protein At1g63360 425 514 - -
Vifa6g01026 931 FunFam Probable disease resistance protein At5g66910 339 425 - -
Vifa6g01026 931 Coils Coil 252 272 - -
Vifa6g01026 931 Coils Coil 139 159 - -
Vifa6g01026 931 PANTHER DISEASE RESISTANCE PROTEIN RP 63 876 IPR044974 GO:0006952
Vifa6g01026 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 439 IPR027417 -
Vifa6g01026 931 Pfam NB-ARC domain 169 425 IPR002182 GO:0043531
Vifa6g01026 931 Gene3D - 5 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01026 Vifa-Chr6 335985125 335987920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01026 183 511 WRKY Transcription Factor Family AT5G45050 24.096 3.29e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01026 - - mtr:25492796 1313.13