Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01018 ATGGCGGCTACTGTATCTGCTTGGTCCAAACCCGGTGCATGGGCACTCGATTCGGAGGAGCACGAAGCCGAACTCCTTCAAAGCCACAACACCGTTGAAACCAAACCGCTCGCTGAGTTTCCTTCTCTCGCCGTCGCCGCCGCTACCAAACCCAAAAAGAAGAAAGCCCAAACCCTAAGTTTGGCTGAGTTTACTGCCAAACCGGTTTCTTCTTTTACGCATCAAGATCCTGTGGTTCTTCCTACCGGTCCTCGTCAGAGGACGGCGGAGGAGATTGAAAGTGATAGGACAAGGCTTGGCGGAGGGTTTAGATCTTATGGGGATAGGCCCAATCGGGGTTCTGGAGGAGATGAGAGTTCGGTTTCGAGATGGGGTTCGTCTAGGGTTTCTGGTGAATTGAGGAGGAATGATTCGTTTGGCTCTAGGGATAGGGATTCGAATCGGGAGTCTGTGCCGTCTAGGGCGGATGAGATTGATAATTGGGCGGCTGCGAAGAAGCCGGTTATTGGGAATGGGTTTGAGAGAAGGGATAGAGGAGAAAGAGGTGGGTTTTTCGATGCGCAGTCGCGTGCTGATGAATCTGATAGTTGGGTTTCGAGTAAGAGTTTTGTGCCGTCGTCGGAGGGACGGAGATTCAGTGGTGGTGGTGGTGGTGGAGGATTTGATAGAGAGAGGAAAATAGGGTTTGGTACTAGCGGTGGTGCGGATTCGGATAATTGGAATAGGAAGAAAGGTGATTCTAGCGTTGGAAGTGAAAGAACCGAGAGCGTTGCTGGTGGAAGGCCAAGGCTTGTTTTGCAACCACGTTCTGCGTCCGCTAGTAATGAAAACCAGGATGTTCCTGCTGCTGTTGCTGTTTCTTTTTCTGGGATTGTAGCTAAGCCCAAGGGTGCAAATCCGTTTGGTGAAGCTAGGCCAAGGGAGCAGGTTTTGGCAGAGAAAGGTCAGGATTGGAAGAAGATTGATGAGCAGCTCGAGAGTGTGAAGATTAAGGAGACAGCAGTGGAAGGGTTTGGAAAGAGGGGTTTTGGTTCTGGCAATGGACGTGCGGAAGATCGATCTGAGAGGAGTTGGAGGAAATCCTCACCATCTGATGATGGTCGTTCAGAAAGTGCTGAGAAAGTGGAGGAAGAACACGTTGAAGAAAACTGA 1152 0.5061 MAATVSAWSKPGAWALDSEEHEAELLQSHNTVETKPLAEFPSLAVAAATKPKKKKAQTLSLAEFTAKPVSSFTHQDPVVLPTGPRQRTAEEIESDRTRLGGGFRSYGDRPNRGSGGDESSVSRWGSSRVSGELRRNDSFGSRDRDSNRESVPSRADEIDNWAAAKKPVIGNGFERRDRGERGGFFDAQSRADESDSWVSSKSFVPSSEGRRFSGGGGGGGFDRERKIGFGTSGGADSDNWNRKKGDSSVGSERTESVAGGRPRLVLQPRSASASNENQDVPAAVAVSFSGIVAKPKGANPFGEARPREQVLAEKGQDWKKIDEQLESVKIKETAVEGFGKRGFGSGNGRAEDRSERSWRKSSPSDDGRSESAEKVEEEHVEEN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01018 383 MobiDBLite consensus disorder prediction 71 278 - -
Vifa6g01018 383 Pfam Plant specific eukaryotic initiation factor 4B 7 333 IPR010433 GO:0003743
Vifa6g01018 383 MobiDBLite consensus disorder prediction 192 207 - -
Vifa6g01018 383 MobiDBLite consensus disorder prediction 329 383 - -
Vifa6g01018 383 MobiDBLite consensus disorder prediction 115 134 - -
Vifa6g01018 383 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 373 IPR010433 GO:0003743
Vifa6g01018 383 MobiDBLite consensus disorder prediction 346 383 - -
Vifa6g01018 383 MobiDBLite consensus disorder prediction 135 161 - -
Vifa6g01018 383 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01018 Vifa-Chr6 334741781 334743802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01018 1 361 Eukaryotic Initiation Factors Gene Family AT4G38710 50.873 3.57e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01018 - - pvu:PHAVU_011G033300g 459.914