Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01016 ATGGAGAGATTCTCATTCTCGTTTCTATTTTTCATCATTTATCTACTTTTTCTTTTCTTCACTCCTCAATTAGCTAGATCACAAAACGACGATTCAAAACCACTTTTGGCACTCAAATCCTCCATTGATATTCACAATAAACTTCCATGGCTACAACAAGTAAACGACGACGTTTGCACTTGGGTAGGTGTTAAAGACTGTTTCCAAGGAAGAGTTAGAAAGCTTGTACTCGAGCATTTCAACTTAACTGGGAAATTAGATTCAGATATCTTAAACCGTTTCGATCAACTTCGAGTTCTTAGCTTCAAAGGAAACTCACTCTCTGGTCAAATCCCTGATCTCTCAAATCTCGTTAATCTCAAGTCTATTTATCTTAACGATAACGATTTCTCTGGCGAGTTTCCTGTTTCGGTTTCGCTTCTTCATAGAGTCAAAGTTATTGTTTTATCCGGTAATAAAATCTCCGGCGAGATCCCGGTGGATTTGCTTAAGCTTTCTCGGCTCTATGTACTGTACTTGCAAGATAATTTGTTTACTGGTTCCATTCCGAGGTTTGACCAAACCGGACTTAAGTACTTGAATGTCTCGAATAATAGACTCTCCGGCGAGATTCCGGTGACGAATGCATTGATCCGGTTTAATACGTCGTCGTTTTCAGGTAACTTAGAGCTCTGCGGTGAACAGATCCACCGTGAATGCAAGAATAAAACTCTGTTATCACCACCGCCATTGGATGTGGATCCGGTTGGAGGAAACACGAAAACGACGTCGTCGAAATCTCACCGTACGAAACTGATAAAGATAATTGGAGGAAGTGTTGGTGGGTTTATTTTGTTGTTAATTTGCTTGATTTTACTGATGTGGGTAATTTGCAAGAACCGTAGGAAGAGAGTGGGTTCTGGTGGAGCAAGAAGAAACAAGGGTAATGCTGACGTGGCAGCTACAGAGGGTGAAAATCCCGGAGAAGGAGAGGGTAGAGGAAGTAATTACGAGGCAAAACAAGGTGGATTTGCTTGGGAAAATGAGGGTATTGGGAAACTGGTGTTCTGCGGAGTAGGGGATCGTGAAATGGGGTATAGTTTAGAGGATTTACTTAAGGCTTCAGCAGAGACATTAGGGAGGGGTATTATGGGAAGTACATATAAAGCAGTGATGGAATCAGGTTTTATTGTTACTGTTAAGAGGTTTAAAGATGCAAGGTACCCTGGGTTGGAGGAGTTTAGGGCACAGATAGAGTTAATTGGTAAGCTTAGACACCCTAATCTGGTCCCACTTAGGGCTTATTTTCAAGCTAAAGAAGAACGTCTTCTTGTCTATGATTATTTCCCCAATGGTAGCCTCTTCTCTCTTATTCATGGATCGAAAACATCTAATGGGGGAAAACCTCTTCACTGGACATCATGTCTTAAAATCGCAGAAGACCTAGCAACAGGCATTCTCTATATCCACCAAAACCCTGGCATGACACACGGAAACCTGAAATCTTCTAATGTGTTACTTGGTTCCGACTTTGAGTCCTGTCTCACTGATTATGGTCTCAATGTGTTCCTCAATCCCGACACAATGGACGAACCAAGTGCCACTTCTTTTTTCTATAGAGCACCCGAGTGCCGCAGTTTTCAACGGCCGCAAACTCAATCTGCTGATGTATACAGCTTTGGTGTCCTTCTCCTCGAGCTTTTGACAGGCAAAACACCCTATCAAGACCTTGTTCAAGCACACGGTTCGGATATACCTAGATGGGTTCGGTCAGTACGCGAAGAAGAGACCGAGTCCGGGGATGATCCTCCCTCATCAGGCAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCAGTTAGTCCAGAGAATAGACCTACAATGAGAGAAGTTCTAAAGATGATAAGAGATGCAAGAGGGGAAACTCATGTCTCATCTAATAATAGTAGTGATCATTCACCTGGTAGATGGTCAGATACTGTTCAAAGCTTGCCAAGGGATGAACATCTTAGCATATAA 2022 0.4238 MERFSFSFLFFIIYLLFLFFTPQLARSQNDDSKPLLALKSSIDIHNKLPWLQQVNDDVCTWVGVKDCFQGRVRKLVLEHFNLTGKLDSDILNRFDQLRVLSFKGNSLSGQIPDLSNLVNLKSIYLNDNDFSGEFPVSVSLLHRVKVIVLSGNKISGEIPVDLLKLSRLYVLYLQDNLFTGSIPRFDQTGLKYLNVSNNRLSGEIPVTNALIRFNTSSFSGNLELCGEQIHRECKNKTLLSPPPLDVDPVGGNTKTTSSKSHRTKLIKIIGGSVGGFILLLICLILLMWVICKNRRKRVGSGGARRNKGNADVAATEGENPGEGEGRGSNYEAKQGGFAWENEGIGKLVFCGVGDREMGYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRFKDARYPGLEEFRAQIELIGKLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSNGGKPLHWTSCLKIAEDLATGILYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLNVFLNPDTMDEPSATSFFYRAPECRSFQRPQTQSADVYSFGVLLLELLTGKTPYQDLVQAHGSDIPRWVRSVREEETESGDDPPSSGNEASEEKLQALLNIAMACVSVSPENRPTMREVLKMIRDARGETHVSSNNSSDHSPGRWSDTVQSLPRDEHLSI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01016 673 Gene3D Phosphorylase Kinase; domain 1 352 441 - -
Vifa6g01016 673 Gene3D Transferase(Phosphotransferase) domain 1 442 661 - -
Vifa6g01016 673 MobiDBLite consensus disorder prediction 641 673 - -
Vifa6g01016 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 641 IPR046959 -
Vifa6g01016 673 SUPERFAMILY Protein kinase-like (PK-like) 370 647 IPR011009 -
Vifa6g01016 673 MobiDBLite consensus disorder prediction 642 673 - -
Vifa6g01016 673 Gene3D Ribonuclease Inhibitor 188 237 IPR032675 -
Vifa6g01016 673 MobiDBLite consensus disorder prediction 298 329 - -
Vifa6g01016 673 MobiDBLite consensus disorder prediction 585 604 - -
Vifa6g01016 673 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Vifa6g01016 673 ProSiteProfiles Protein kinase domain profile. 366 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g01016 673 FunFam Nuclear pore complex protein NUP107 28 184 - -
Vifa6g01016 673 SUPERFAMILY L domain-like 39 225 - -
Vifa6g01016 673 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01016 Vifa-Chr6 332904699 332908725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01016 5 673 Receptor kinase-like Gene Family AT1G60630 59.911 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa6g01016 Pkinase 7.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01016 - - lja:Lj3g3v3500180.1 1014.6